miRNA display CGI


Results 21 - 40 of 138 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14576 5' -56.3 NC_003521.1 + 4259 0.69 0.839703
Target:  5'- gAugGCAcACGGCGAGCACgaaaaccugagaagCgAGGGAa -3'
miRNA:   3'- -UugCGUaUGCCGCUUGUG--------------GgUCCCUg -5'
14576 5' -56.3 NC_003521.1 + 7603 0.69 0.832436
Target:  5'- uGACGCAagcuguacggugGCGGCGGACugUCGGGaACg -3'
miRNA:   3'- -UUGCGUa-----------UGCCGCUUGugGGUCCcUG- -5'
14576 5' -56.3 NC_003521.1 + 38224 0.71 0.732936
Target:  5'- aGGCGCAgggcggccuCGGCGGGCggggcggagacgcgGCCCAGGGuCa -3'
miRNA:   3'- -UUGCGUau-------GCCGCUUG--------------UGGGUCCCuG- -5'
14576 5' -56.3 NC_003521.1 + 102663 0.74 0.577198
Target:  5'- aGGCGCGaggagACGGCGAagccgccgggcaGCACCCAGuGGAa -3'
miRNA:   3'- -UUGCGUa----UGCCGCU------------UGUGGGUC-CCUg -5'
14576 5' -56.3 NC_003521.1 + 118267 0.67 0.905443
Target:  5'- uGACGCuagccaugaucUGCGGCG-ACcUCUAGGGACg -3'
miRNA:   3'- -UUGCGu----------AUGCCGCuUGuGGGUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 119748 0.68 0.865059
Target:  5'- cGCGUAUGCGGCaGcuggaguaccAGCACaCCuGGGACc -3'
miRNA:   3'- uUGCGUAUGCCG-C----------UUGUG-GGuCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 30380 0.69 0.817483
Target:  5'- aAACGUAgguUGCGGCGAcagaaccugcguAgGCCCugacGGGGACa -3'
miRNA:   3'- -UUGCGU---AUGCCGCU------------UgUGGG----UCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 16100 0.74 0.547651
Target:  5'- -cUGCGU-CGGCGAGCACCaCGggcGGGACg -3'
miRNA:   3'- uuGCGUAuGCCGCUUGUGG-GU---CCCUG- -5'
14576 5' -56.3 NC_003521.1 + 148565 0.68 0.865059
Target:  5'- --gGUA-GCGGCagcGGCACCCAGGGAg -3'
miRNA:   3'- uugCGUaUGCCGc--UUGUGGGUCCCUg -5'
14576 5' -56.3 NC_003521.1 + 120546 0.75 0.508095
Target:  5'- cGGCgGCcgGCGGUcccggggGAGCGCCCGGGGAUa -3'
miRNA:   3'- -UUG-CGuaUGCCG-------CUUGUGGGUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 58944 0.69 0.817483
Target:  5'- gAACGuCAU-CGGCGAGCucGCCgAGGGGu -3'
miRNA:   3'- -UUGC-GUAuGCCGCUUG--UGGgUCCCUg -5'
14576 5' -56.3 NC_003521.1 + 229204 0.69 0.841298
Target:  5'- uGGCGCGUugGGUGAgauugcgAUACCCgccAGuGGACc -3'
miRNA:   3'- -UUGCGUAugCCGCU-------UGUGGG---UC-CCUG- -5'
14576 5' -56.3 NC_003521.1 + 240622 0.7 0.773347
Target:  5'- cGGCgGCGUGCGGCGGGcCGgCCGGucGGACg -3'
miRNA:   3'- -UUG-CGUAUGCCGCUU-GUgGGUC--CCUG- -5'
14576 5' -56.3 NC_003521.1 + 76671 0.71 0.745348
Target:  5'- aAACGCGgACuGCGAggACGCUgGGGGACa -3'
miRNA:   3'- -UUGCGUaUGcCGCU--UGUGGgUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 139451 0.71 0.716494
Target:  5'- cGGCGCG-ACGGCucgcGCACCC-GGGACu -3'
miRNA:   3'- -UUGCGUaUGCCGcu--UGUGGGuCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 102371 0.73 0.597094
Target:  5'- uGGCGCcgcCGGCGAugcACGCgCGGGGACg -3'
miRNA:   3'- -UUGCGuauGCCGCU---UGUGgGUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 200334 0.67 0.91714
Target:  5'- uGCGC-UGCGGCGccguGGCGCgCCGcGGACa -3'
miRNA:   3'- uUGCGuAUGCCGC----UUGUG-GGUcCCUG- -5'
14576 5' -56.3 NC_003521.1 + 150781 0.67 0.911405
Target:  5'- cGCGCGacgACgGGCGGGCGCgagccgCCAGGGGg -3'
miRNA:   3'- uUGCGUa--UG-CCGCUUGUG------GGUCCCUg -5'
14576 5' -56.3 NC_003521.1 + 167584 0.68 0.895437
Target:  5'- cAGCGCGUgucgauggagaGCGGCGcgcagaggcgccgcaGGCGCUCGGGGuCg -3'
miRNA:   3'- -UUGCGUA-----------UGCCGC---------------UUGUGGGUCCCuG- -5'
14576 5' -56.3 NC_003521.1 + 68515 0.68 0.87232
Target:  5'- uGCGCcaGCGGCGucaaGGCugUguGGGACa -3'
miRNA:   3'- uUGCGuaUGCCGC----UUGugGguCCCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.