miRNA display CGI


Results 61 - 80 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14576 5' -56.3 NC_003521.1 + 168058 0.69 0.808948
Target:  5'- -cCGCcgACGGCGggUGCUCgagacgcgGGGGGCu -3'
miRNA:   3'- uuGCGuaUGCCGCuuGUGGG--------UCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 101787 0.69 0.834064
Target:  5'- uGCGCAggucagUugGGCGcGCacgaaGCCCAGGGGg -3'
miRNA:   3'- uUGCGU------AugCCGCuUG-----UGGGUCCCUg -5'
14576 5' -56.3 NC_003521.1 + 55086 0.69 0.834064
Target:  5'- cGGCGCAcccgcuCGGCGAucaccuccGCACCCGGcGaGACg -3'
miRNA:   3'- -UUGCGUau----GCCGCU--------UGUGGGUC-C-CUG- -5'
14576 5' -56.3 NC_003521.1 + 113380 0.71 0.716494
Target:  5'- gGAgGguUACGGCGGACGCCgCGGGcGGg -3'
miRNA:   3'- -UUgCguAUGCCGCUUGUGG-GUCC-CUg -5'
14576 5' -56.3 NC_003521.1 + 150472 0.69 0.842093
Target:  5'- ------gGCGGCGAGCGCCUgguGGGGCc -3'
miRNA:   3'- uugcguaUGCCGCUUGUGGGu--CCCUG- -5'
14576 5' -56.3 NC_003521.1 + 99601 0.67 0.922648
Target:  5'- cGGCGCGU-UGGUGAccugcaGCGCCCGGcGGCg -3'
miRNA:   3'- -UUGCGUAuGCCGCU------UGUGGGUCcCUG- -5'
14576 5' -56.3 NC_003521.1 + 82765 0.69 0.84994
Target:  5'- cGCGCGacCGGCGGGCcguggaGCaCAGGGACg -3'
miRNA:   3'- uUGCGUauGCCGCUUG------UGgGUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 131105 0.69 0.842093
Target:  5'- gGACgGCGggGCGGCGcGGCugCCgggaAGGGACa -3'
miRNA:   3'- -UUG-CGUa-UGCCGC-UUGugGG----UCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 27514 0.7 0.782449
Target:  5'- gGGgGCGUGCGGCccgaGGCGCCCAcGGuGGCg -3'
miRNA:   3'- -UUgCGUAUGCCGc---UUGUGGGU-CC-CUG- -5'
14576 5' -56.3 NC_003521.1 + 92018 0.67 0.91714
Target:  5'- aGGCGCGgcggcgGCGGCGGugGguccgggggucCCCGGGGuGCc -3'
miRNA:   3'- -UUGCGUa-----UGCCGCUugU-----------GGGUCCC-UG- -5'
14576 5' -56.3 NC_003521.1 + 102889 0.67 0.91714
Target:  5'- aGGCGCAga-GGCGcagcACGCCCgacAGGGAg -3'
miRNA:   3'- -UUGCGUaugCCGCu---UGUGGG---UCCCUg -5'
14576 5' -56.3 NC_003521.1 + 234054 0.67 0.922107
Target:  5'- --gGCAUGguacuccUGGCcauGGACGCCCuGGGACu -3'
miRNA:   3'- uugCGUAU-------GCCG---CUUGUGGGuCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 63015 0.67 0.922648
Target:  5'- --aGCcgGCGGCGcccacGACGCCCAccaGcGGACa -3'
miRNA:   3'- uugCGuaUGCCGC-----UUGUGGGU---C-CCUG- -5'
14576 5' -56.3 NC_003521.1 + 133756 0.67 0.922648
Target:  5'- --gGCAggccCGGCGAu--UCCGGGGACg -3'
miRNA:   3'- uugCGUau--GCCGCUuguGGGUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 139096 0.67 0.922648
Target:  5'- uACGUGUuCGGCGugaagGACGCCgAGGGGg -3'
miRNA:   3'- uUGCGUAuGCCGC-----UUGUGGgUCCCUg -5'
14576 5' -56.3 NC_003521.1 + 195405 0.67 0.922648
Target:  5'- cGCGCcgACGGCGGGCACCgGcuaccuGGuGAa -3'
miRNA:   3'- uUGCGuaUGCCGCUUGUGGgU------CC-CUg -5'
14576 5' -56.3 NC_003521.1 + 62106 0.66 0.927926
Target:  5'- gAACGCuu-CGGCGccCGCgCGGGGAa -3'
miRNA:   3'- -UUGCGuauGCCGCuuGUGgGUCCCUg -5'
14576 5' -56.3 NC_003521.1 + 57587 0.66 0.932975
Target:  5'- gGGCGCcgGCGGCGAAC-CCCGa---- -3'
miRNA:   3'- -UUGCGuaUGCCGCUUGuGGGUcccug -5'
14576 5' -56.3 NC_003521.1 + 72991 0.66 0.932975
Target:  5'- --aGCccGCGGCGGucgUGCCCGGGGGg -3'
miRNA:   3'- uugCGuaUGCCGCUu--GUGGGUCCCUg -5'
14576 5' -56.3 NC_003521.1 + 117506 0.7 0.782449
Target:  5'- cGGgGCGUACGGCGGuauGCACuCCGuGGGCu -3'
miRNA:   3'- -UUgCGUAUGCCGCU---UGUG-GGUcCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.