miRNA display CGI


Results 81 - 100 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14576 5' -56.3 NC_003521.1 + 103118 0.72 0.687018
Target:  5'- gGACGCGgggugagGCuGGUGGGgagaGCCCAGGGGCa -3'
miRNA:   3'- -UUGCGUa------UG-CCGCUUg---UGGGUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 49113 0.68 0.892193
Target:  5'- uGCGCGUggugaccGCGGCGccGCugCUgcGGGGACu -3'
miRNA:   3'- uUGCGUA-------UGCCGCu-UGugGG--UCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 33205 0.68 0.892846
Target:  5'- -gUGCAggcCGGCGAGcCGCCCAGacGGAUc -3'
miRNA:   3'- uuGCGUau-GCCGCUU-GUGGGUC--CCUG- -5'
14576 5' -56.3 NC_003521.1 + 103067 0.66 0.927926
Target:  5'- gGGCGgGUGCgcgGGCGAgggcuGCugCUGGGGAUg -3'
miRNA:   3'- -UUGCgUAUG---CCGCU-----UGugGGUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 62106 0.66 0.927926
Target:  5'- gAACGCuu-CGGCGccCGCgCGGGGAa -3'
miRNA:   3'- -UUGCGuauGCCGCuuGUGgGUCCCUg -5'
14576 5' -56.3 NC_003521.1 + 195405 0.67 0.922648
Target:  5'- cGCGCcgACGGCGGGCACCgGcuaccuGGuGAa -3'
miRNA:   3'- uUGCGuaUGCCGCUUGUGGgU------CC-CUg -5'
14576 5' -56.3 NC_003521.1 + 99601 0.67 0.922648
Target:  5'- cGGCGCGU-UGGUGAccugcaGCGCCCGGcGGCg -3'
miRNA:   3'- -UUGCGUAuGCCGCU------UGUGGGUCcCUG- -5'
14576 5' -56.3 NC_003521.1 + 139096 0.67 0.922648
Target:  5'- uACGUGUuCGGCGugaagGACGCCgAGGGGg -3'
miRNA:   3'- uUGCGUAuGCCGC-----UUGUGGgUCCCUg -5'
14576 5' -56.3 NC_003521.1 + 133756 0.67 0.922648
Target:  5'- --gGCAggccCGGCGAu--UCCGGGGACg -3'
miRNA:   3'- uugCGUau--GCCGCUuguGGGUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 63015 0.67 0.922648
Target:  5'- --aGCcgGCGGCGcccacGACGCCCAccaGcGGACa -3'
miRNA:   3'- uugCGuaUGCCGC-----UUGUGGGU---C-CCUG- -5'
14576 5' -56.3 NC_003521.1 + 234054 0.67 0.922107
Target:  5'- --gGCAUGguacuccUGGCcauGGACGCCCuGGGACu -3'
miRNA:   3'- uugCGUAU-------GCCG---CUUGUGGGuCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 102889 0.67 0.91714
Target:  5'- aGGCGCAga-GGCGcagcACGCCCgacAGGGAg -3'
miRNA:   3'- -UUGCGUaugCCGCu---UGUGGG---UCCCUg -5'
14576 5' -56.3 NC_003521.1 + 92018 0.67 0.91714
Target:  5'- aGGCGCGgcggcgGCGGCGGugGguccgggggucCCCGGGGuGCc -3'
miRNA:   3'- -UUGCGUa-----UGCCGCUugU-----------GGGUCCC-UG- -5'
14576 5' -56.3 NC_003521.1 + 12009 0.67 0.91714
Target:  5'- -cCGCAUGCuucgaagggaGGgGAACGCUC-GGGACu -3'
miRNA:   3'- uuGCGUAUG----------CCgCUUGUGGGuCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 7440 0.67 0.91714
Target:  5'- cACGgAcGCGGCGcacAGCACCaCGcGGGACg -3'
miRNA:   3'- uUGCgUaUGCCGC---UUGUGG-GU-CCCUG- -5'
14576 5' -56.3 NC_003521.1 + 88653 0.67 0.911989
Target:  5'- aGGCGCAgagggccgccagguCGGUGGGCcggcggcccgGCUCGGGGACa -3'
miRNA:   3'- -UUGCGUau------------GCCGCUUG----------UGGGUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 45654 0.67 0.911405
Target:  5'- -cCGCGgggucCGGCGcACACCCgcuaucAGGGGCc -3'
miRNA:   3'- uuGCGUau---GCCGCuUGUGGG------UCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 150432 0.67 0.905443
Target:  5'- -uCGCGUGCaGGaGAgcGCGCCCGGGGuCc -3'
miRNA:   3'- uuGCGUAUG-CCgCU--UGUGGGUCCCuG- -5'
14576 5' -56.3 NC_003521.1 + 164774 0.67 0.905443
Target:  5'- gAAC-CAUagugacGCGGCGGGCACgggucgUCGGGGACg -3'
miRNA:   3'- -UUGcGUA------UGCCGCUUGUG------GGUCCCUG- -5'
14576 5' -56.3 NC_003521.1 + 219646 0.67 0.904834
Target:  5'- gAACGCGUcuCGGCGGagugaccaucgaaACAgcCCCGGGGGg -3'
miRNA:   3'- -UUGCGUAu-GCCGCU-------------UGU--GGGUCCCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.