miRNA display CGI


Results 1 - 20 of 303 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14577 3' -53.3 NC_003521.1 + 49575 0.66 0.979902
Target:  5'- uGCcGCGugGGccGCGGCG-CCGCCUc -3'
miRNA:   3'- uUGaCGUugUCaaCGUCGUuGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 123605 0.66 0.977607
Target:  5'- -cUUGCGucGCAGggGCAGCcGCCGUa- -3'
miRNA:   3'- uuGACGU--UGUCaaCGUCGuUGGCGgg -5'
14577 3' -53.3 NC_003521.1 + 114945 0.66 0.982017
Target:  5'- gAGCUGCucgcGCAGcgGCGGCuGCUGCg- -3'
miRNA:   3'- -UUGACGu---UGUCaaCGUCGuUGGCGgg -5'
14577 3' -53.3 NC_003521.1 + 106997 0.66 0.977607
Target:  5'- -uCUGUAugGuGUUGCGGCAcuGCUGCUUc -3'
miRNA:   3'- uuGACGUugU-CAACGUCGU--UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 166544 0.66 0.981192
Target:  5'- cAGCUGCGACGGaUUguuguacagcaugaGCAGCGACuccaggaacccguCGUCCa -3'
miRNA:   3'- -UUGACGUUGUC-AA--------------CGUCGUUG-------------GCGGG- -5'
14577 3' -53.3 NC_003521.1 + 59428 0.66 0.982017
Target:  5'- ---cGCGACAGcgGC-GCcGCCGCCg -3'
miRNA:   3'- uugaCGUUGUCaaCGuCGuUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 234292 0.66 0.982017
Target:  5'- -cCUGgGGCGGgacGCAG--ACCGCCCu -3'
miRNA:   3'- uuGACgUUGUCaa-CGUCguUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 74792 0.66 0.982017
Target:  5'- cGGCgGCAGCGGUaGCGGCGAgaCGCg- -3'
miRNA:   3'- -UUGaCGUUGUCAaCGUCGUUg-GCGgg -5'
14577 3' -53.3 NC_003521.1 + 137820 0.66 0.979233
Target:  5'- cAGCUGCAuuauuaaggcgcucACGcc-GCGGCuggGCCGCCCc -3'
miRNA:   3'- -UUGACGU--------------UGUcaaCGUCGu--UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 23689 0.66 0.982017
Target:  5'- cACUGCAACcgacuGUUGguGUGuCCGCgCg -3'
miRNA:   3'- uUGACGUUGu----CAACguCGUuGGCGgG- -5'
14577 3' -53.3 NC_003521.1 + 127521 0.66 0.982219
Target:  5'- -gUUGCggUAGUggaagagcaugugcgGCGGCAGCaCGCCg -3'
miRNA:   3'- uuGACGuuGUCAa--------------CGUCGUUG-GCGGg -5'
14577 3' -53.3 NC_003521.1 + 156547 0.66 0.982017
Target:  5'- -cCUGUGACAacgUGCucagccugcccAGCGACCGCCa -3'
miRNA:   3'- uuGACGUUGUca-ACG-----------UCGUUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 168565 0.66 0.982017
Target:  5'- gGGCUGCG--GGUaagGUGGCGGCUGaCCCa -3'
miRNA:   3'- -UUGACGUugUCAa--CGUCGUUGGC-GGG- -5'
14577 3' -53.3 NC_003521.1 + 70749 0.66 0.982017
Target:  5'- cAGCUGCAGCGc--GCcGCGGCCGaucaCCa -3'
miRNA:   3'- -UUGACGUUGUcaaCGuCGUUGGCg---GG- -5'
14577 3' -53.3 NC_003521.1 + 162346 0.66 0.987365
Target:  5'- cGACUGCGGgcGUggGCGcGCAGCCcCCCg -3'
miRNA:   3'- -UUGACGUUguCAa-CGU-CGUUGGcGGG- -5'
14577 3' -53.3 NC_003521.1 + 181525 0.66 0.979902
Target:  5'- gGugUGCGcgaagacuaGCGGgccGCcGCGACCGCUCa -3'
miRNA:   3'- -UugACGU---------UGUCaa-CGuCGUUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 201811 0.66 0.979902
Target:  5'- cGCUGCuGACGGccgUGCAGCGccacauccaccAgCGCCUg -3'
miRNA:   3'- uUGACG-UUGUCa--ACGUCGU-----------UgGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 191144 0.66 0.979902
Target:  5'- uGACgGCGACAGc-GCcGCGcUCGCCCg -3'
miRNA:   3'- -UUGaCGUUGUCaaCGuCGUuGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 33203 0.66 0.983961
Target:  5'- ---aGguGCAGgc-CGGCgAGCCGCCCa -3'
miRNA:   3'- uugaCguUGUCaacGUCG-UUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 136054 0.66 0.979902
Target:  5'- --gUGCGACcuggGCAGCGGCUGCgCg -3'
miRNA:   3'- uugACGUUGucaaCGUCGUUGGCGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.