miRNA display CGI


Results 21 - 40 of 303 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14577 3' -53.3 NC_003521.1 + 114945 0.66 0.982017
Target:  5'- gAGCUGCucgcGCAGcgGCGGCuGCUGCg- -3'
miRNA:   3'- -UUGACGu---UGUCaaCGUCGuUGGCGgg -5'
14577 3' -53.3 NC_003521.1 + 74792 0.66 0.982017
Target:  5'- cGGCgGCAGCGGUaGCGGCGAgaCGCg- -3'
miRNA:   3'- -UUGaCGUUGUCAaCGUCGUUg-GCGgg -5'
14577 3' -53.3 NC_003521.1 + 45206 0.66 0.985223
Target:  5'- -cCUGCGACGcaucuaCAGCAugaugaucgaaggcGCCGCCCg -3'
miRNA:   3'- uuGACGUUGUcaac--GUCGU--------------UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 120491 0.66 0.977607
Target:  5'- ---aGCAGCAGcaGCGGCcACCGCa- -3'
miRNA:   3'- uugaCGUUGUCaaCGUCGuUGGCGgg -5'
14577 3' -53.3 NC_003521.1 + 166544 0.66 0.981192
Target:  5'- cAGCUGCGACGGaUUguuguacagcaugaGCAGCGACuccaggaacccguCGUCCa -3'
miRNA:   3'- -UUGACGUUGUC-AA--------------CGUCGUUG-------------GCGGG- -5'
14577 3' -53.3 NC_003521.1 + 106997 0.66 0.977607
Target:  5'- -uCUGUAugGuGUUGCGGCAcuGCUGCUUc -3'
miRNA:   3'- uuGACGUugU-CAACGUCGU--UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 156547 0.66 0.982017
Target:  5'- -cCUGUGACAacgUGCucagccugcccAGCGACCGCCa -3'
miRNA:   3'- uuGACGUUGUca-ACG-----------UCGUUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 23893 0.66 0.983961
Target:  5'- ---gGCAACAGcguaUGgGGuCGACCGCCUc -3'
miRNA:   3'- uugaCGUUGUCa---ACgUC-GUUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 181525 0.66 0.979902
Target:  5'- gGugUGCGcgaagacuaGCGGgccGCcGCGACCGCUCa -3'
miRNA:   3'- -UugACGU---------UGUCaa-CGuCGUUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 1584 0.66 0.979902
Target:  5'- cGCUGCuGACGGccgUGCAGCGccacauccaccAgCGCCUg -3'
miRNA:   3'- uUGACG-UUGUCa--ACGUCGU-----------UgGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 60011 0.66 0.983961
Target:  5'- -cCUGCAGCAGcgcGaCAGC-ACCGgCCu -3'
miRNA:   3'- uuGACGUUGUCaa-C-GUCGuUGGCgGG- -5'
14577 3' -53.3 NC_003521.1 + 238728 0.66 0.987365
Target:  5'- cACcgGCAGCAGUUccaGCAGCAGaaGUCg -3'
miRNA:   3'- uUGa-CGUUGUCAA---CGUCGUUggCGGg -5'
14577 3' -53.3 NC_003521.1 + 234391 0.66 0.987365
Target:  5'- uGCUGUu---GUcGCAGCGGCCcCCCg -3'
miRNA:   3'- uUGACGuuguCAaCGUCGUUGGcGGG- -5'
14577 3' -53.3 NC_003521.1 + 124876 0.66 0.987365
Target:  5'- cGGCgGCAGCAGgcaCAGCgcgUCGCCCu -3'
miRNA:   3'- -UUGaCGUUGUCaacGUCGuu-GGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 70749 0.66 0.982017
Target:  5'- cAGCUGCAGCGc--GCcGCGGCCGaucaCCa -3'
miRNA:   3'- -UUGACGUUGUcaaCGuCGUUGGCg---GG- -5'
14577 3' -53.3 NC_003521.1 + 83941 0.66 0.98574
Target:  5'- --gUGCcauCGG--GCAGCGGCCGCCg -3'
miRNA:   3'- uugACGuu-GUCaaCGUCGUUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 165626 0.66 0.987365
Target:  5'- --gUGCAccacggugaacACGGUguugaGCAGCAGCaCGCCg -3'
miRNA:   3'- uugACGU-----------UGUCAa----CGUCGUUG-GCGGg -5'
14577 3' -53.3 NC_003521.1 + 124042 0.66 0.977607
Target:  5'- aGACgGcCAGC-GUgccGCGGCGGCgGCCCa -3'
miRNA:   3'- -UUGaC-GUUGuCAa--CGUCGUUGgCGGG- -5'
14577 3' -53.3 NC_003521.1 + 193381 0.66 0.979902
Target:  5'- gGAgUGCGGCGcccgGCuGCAugUGCCCu -3'
miRNA:   3'- -UUgACGUUGUcaa-CGuCGUugGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 198797 0.66 0.979902
Target:  5'- cAGCUGCGugGugccgGCGGCGucugucguGCCGCCg -3'
miRNA:   3'- -UUGACGUugUcaa--CGUCGU--------UGGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.