miRNA display CGI


Results 41 - 60 of 303 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14577 3' -53.3 NC_003521.1 + 7747 0.66 0.982017
Target:  5'- ---aGCGGCGGagGCGGCGGCaGUCCc -3'
miRNA:   3'- uugaCGUUGUCaaCGUCGUUGgCGGG- -5'
14577 3' -53.3 NC_003521.1 + 181525 0.66 0.979902
Target:  5'- gGugUGCGcgaagacuaGCGGgccGCcGCGACCGCUCa -3'
miRNA:   3'- -UugACGU---------UGUCaa-CGuCGUUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 112328 0.66 0.983961
Target:  5'- cGCUGUcGCAGgccgGCGcGCAcagccucacgccGCUGCCCa -3'
miRNA:   3'- uUGACGuUGUCaa--CGU-CGU------------UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 182072 0.66 0.982017
Target:  5'- uGGCUGgAccucagcccGCAGUggcUGCuGCAccGCCGCCUg -3'
miRNA:   3'- -UUGACgU---------UGUCA---ACGuCGU--UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 120781 0.66 0.98574
Target:  5'- cACUGC-GCGGUggGCGagcGCGACCaGCUCa -3'
miRNA:   3'- uUGACGuUGUCAa-CGU---CGUUGG-CGGG- -5'
14577 3' -53.3 NC_003521.1 + 127521 0.66 0.982219
Target:  5'- -gUUGCggUAGUggaagagcaugugcgGCGGCAGCaCGCCg -3'
miRNA:   3'- uuGACGuuGUCAa--------------CGUCGUUG-GCGGg -5'
14577 3' -53.3 NC_003521.1 + 234292 0.66 0.982017
Target:  5'- -cCUGgGGCGGgacGCAG--ACCGCCCu -3'
miRNA:   3'- uuGACgUUGUCaa-CGUCguUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 38501 0.66 0.987365
Target:  5'- cACcgGCAGCAGUUccaGCAGCAGaaGUCg -3'
miRNA:   3'- uUGa-CGUUGUCAA---CGUCGUUggCGGg -5'
14577 3' -53.3 NC_003521.1 + 44301 0.66 0.987365
Target:  5'- gAGCUGgGcgGGUUGCuGUGGCCGCUg -3'
miRNA:   3'- -UUGACgUugUCAACGuCGUUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 162346 0.66 0.987365
Target:  5'- cGACUGCGGgcGUggGCGcGCAGCCcCCCg -3'
miRNA:   3'- -UUGACGUUguCAa-CGU-CGUUGGcGGG- -5'
14577 3' -53.3 NC_003521.1 + 165626 0.66 0.987365
Target:  5'- --gUGCAccacggugaacACGGUguugaGCAGCAGCaCGCCg -3'
miRNA:   3'- uugACGU-----------UGUCAa----CGUCGUUG-GCGGg -5'
14577 3' -53.3 NC_003521.1 + 78477 0.66 0.983961
Target:  5'- gGGCUGCGcgcccACGcccGCAGUcGCCGCCUg -3'
miRNA:   3'- -UUGACGU-----UGUcaaCGUCGuUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 235212 0.66 0.98574
Target:  5'- cGACUGCGACgAGUgGCAGUcgcaccucuACCGCg- -3'
miRNA:   3'- -UUGACGUUG-UCAaCGUCGu--------UGGCGgg -5'
14577 3' -53.3 NC_003521.1 + 124876 0.66 0.987365
Target:  5'- cGGCgGCAGCAGgcaCAGCgcgUCGCCCu -3'
miRNA:   3'- -UUGaCGUUGUCaacGUCGuu-GGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 33203 0.66 0.983961
Target:  5'- ---aGguGCAGgc-CGGCgAGCCGCCCa -3'
miRNA:   3'- uugaCguUGUCaacGUCG-UUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 168565 0.66 0.982017
Target:  5'- gGGCUGCG--GGUaagGUGGCGGCUGaCCCa -3'
miRNA:   3'- -UUGACGUugUCAa--CGUCGUUGGC-GGG- -5'
14577 3' -53.3 NC_003521.1 + 26176 0.66 0.983961
Target:  5'- uGCUGcCAACGaa-GC-GCAGCCGCUCg -3'
miRNA:   3'- uUGAC-GUUGUcaaCGuCGUUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 60011 0.66 0.983961
Target:  5'- -cCUGCAGCAGcgcGaCAGC-ACCGgCCu -3'
miRNA:   3'- uuGACGUUGUCaa-C-GUCGuUGGCgGG- -5'
14577 3' -53.3 NC_003521.1 + 23893 0.66 0.983961
Target:  5'- ---gGCAACAGcguaUGgGGuCGACCGCCUc -3'
miRNA:   3'- uugaCGUUGUCa---ACgUC-GUUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 77933 0.66 0.982017
Target:  5'- -cCUGCAgGCAGUaGCGGCccaccugcGCgCGCCCc -3'
miRNA:   3'- uuGACGU-UGUCAaCGUCGu-------UG-GCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.