miRNA display CGI


Results 61 - 80 of 303 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14577 3' -53.3 NC_003521.1 + 36771 0.66 0.985223
Target:  5'- cGACUGCGGCGacugGCAGgGccacgcgcugcggaGCCGCUCg -3'
miRNA:   3'- -UUGACGUUGUcaa-CGUCgU--------------UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 136403 0.66 0.982017
Target:  5'- cGCggGCcGCGuGUgagGCAGaCAGCCGUCCg -3'
miRNA:   3'- uUGa-CGuUGU-CAa--CGUC-GUUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 61945 0.66 0.979902
Target:  5'- aGAC-GCAACAGgcgGCcucGCucuACUGCCCg -3'
miRNA:   3'- -UUGaCGUUGUCaa-CGu--CGu--UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 123605 0.66 0.977607
Target:  5'- -cUUGCGucGCAGggGCAGCcGCCGUa- -3'
miRNA:   3'- uuGACGU--UGUCaaCGUCGuUGGCGgg -5'
14577 3' -53.3 NC_003521.1 + 106997 0.66 0.977607
Target:  5'- -uCUGUAugGuGUUGCGGCAcuGCUGCUUc -3'
miRNA:   3'- uuGACGUugU-CAACGUCGU--UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 39150 0.67 0.975125
Target:  5'- uGCUGCcaccGGCGGc-GCAGCucGCgGCCCa -3'
miRNA:   3'- uUGACG----UUGUCaaCGUCGu-UGgCGGG- -5'
14577 3' -53.3 NC_003521.1 + 22421 0.67 0.975125
Target:  5'- uGCUGC-GCGGc-GUGGCcgaguACCGCCCg -3'
miRNA:   3'- uUGACGuUGUCaaCGUCGu----UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 33040 0.67 0.972169
Target:  5'- --gUGCcAUAGa-GCAGCAcguggauGCCGCCCa -3'
miRNA:   3'- uugACGuUGUCaaCGUCGU-------UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 157958 0.67 0.963178
Target:  5'- aGGCUGggcgaCGACGGcgcugGUAGCGacgccGCCGCCCg -3'
miRNA:   3'- -UUGAC-----GUUGUCaa---CGUCGU-----UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 160506 0.67 0.963178
Target:  5'- aGACcGCGGCGGgaggaggggGCGGCAGCCuCCUc -3'
miRNA:   3'- -UUGaCGUUGUCaa-------CGUCGUUGGcGGG- -5'
14577 3' -53.3 NC_003521.1 + 74694 0.67 0.972448
Target:  5'- cAGCaGCGACGGcggcgccGCGGCAGCgGCUCc -3'
miRNA:   3'- -UUGaCGUUGUCaa-----CGUCGUUGgCGGG- -5'
14577 3' -53.3 NC_003521.1 + 146896 0.67 0.963178
Target:  5'- cGGCggGCAGCGGUagucgccgcuUGCcGCGACCagccacGCCCa -3'
miRNA:   3'- -UUGa-CGUUGUCA----------ACGuCGUUGG------CGGG- -5'
14577 3' -53.3 NC_003521.1 + 75319 0.67 0.972448
Target:  5'- cGACUGCGucaccCAGaUGCuGaCGGCgGCCCg -3'
miRNA:   3'- -UUGACGUu----GUCaACGuC-GUUGgCGGG- -5'
14577 3' -53.3 NC_003521.1 + 111156 0.67 0.972448
Target:  5'- ---cGgGACGGUccGCAuagcGCGGCCGCCCc -3'
miRNA:   3'- uugaCgUUGUCAa-CGU----CGUUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 52163 0.67 0.975125
Target:  5'- ---aGCGACGGUaccGCGGgu-CCGCCCg -3'
miRNA:   3'- uugaCGUUGUCAa--CGUCguuGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 63895 0.67 0.973543
Target:  5'- gAGCUGCAGCAGUugggcacccacaagaUGCuGgAGCUGCa- -3'
miRNA:   3'- -UUGACGUUGUCA---------------ACGuCgUUGGCGgg -5'
14577 3' -53.3 NC_003521.1 + 83760 0.67 0.975125
Target:  5'- -cCUGgGACAGggugGCGGCGccccCCGCCg -3'
miRNA:   3'- uuGACgUUGUCaa--CGUCGUu---GGCGGg -5'
14577 3' -53.3 NC_003521.1 + 239378 0.67 0.975125
Target:  5'- uGCUGCcaccGGCGGc-GCAGCucGCgGCCCa -3'
miRNA:   3'- uUGACG----UUGUCaaCGUCGu-UGgCGGG- -5'
14577 3' -53.3 NC_003521.1 + 203717 0.67 0.972448
Target:  5'- ---aGCGACGGcaGCAGCAGCCGg-- -3'
miRNA:   3'- uugaCGUUGUCaaCGUCGUUGGCggg -5'
14577 3' -53.3 NC_003521.1 + 69720 0.67 0.966481
Target:  5'- -uCUGCuGACAG-UGCAGCuucuCCuuGCCCa -3'
miRNA:   3'- uuGACG-UUGUCaACGUCGuu--GG--CGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.