miRNA display CGI


Results 81 - 100 of 303 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14577 3' -53.3 NC_003521.1 + 43818 0.67 0.969569
Target:  5'- ---cGCAGCAGccggGuCAGCcGCCGCCg -3'
miRNA:   3'- uugaCGUUGUCaa--C-GUCGuUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 26635 0.67 0.975125
Target:  5'- gGACgUGCGGCAcGUUGCcaccgAACUGCCCg -3'
miRNA:   3'- -UUG-ACGUUGU-CAACGucg--UUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 127892 0.67 0.975125
Target:  5'- ---cGCggUAGgcGUAGUAGuuGCCCg -3'
miRNA:   3'- uugaCGuuGUCaaCGUCGUUggCGGG- -5'
14577 3' -53.3 NC_003521.1 + 73241 0.67 0.975125
Target:  5'- gAGCgGCAACAGcaGCGGCGugacgacgagcGCCGUCa -3'
miRNA:   3'- -UUGaCGUUGUCaaCGUCGU-----------UGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 58418 0.67 0.975125
Target:  5'- --aUGCGGCGGUUgacgaagccGCAGCG-CUGCCg -3'
miRNA:   3'- uugACGUUGUCAA---------CGUCGUuGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 28151 0.67 0.975125
Target:  5'- ---gGCGACg---GCGGCGACCauGCCCg -3'
miRNA:   3'- uugaCGUUGucaaCGUCGUUGG--CGGG- -5'
14577 3' -53.3 NC_003521.1 + 239378 0.67 0.975125
Target:  5'- uGCUGCcaccGGCGGc-GCAGCucGCgGCCCa -3'
miRNA:   3'- uUGACG----UUGUCaaCGUCGu-UGgCGGG- -5'
14577 3' -53.3 NC_003521.1 + 63895 0.67 0.973543
Target:  5'- gAGCUGCAGCAGUugggcacccacaagaUGCuGgAGCUGCa- -3'
miRNA:   3'- -UUGACGUUGUCA---------------ACGuCgUUGGCGgg -5'
14577 3' -53.3 NC_003521.1 + 75319 0.67 0.972448
Target:  5'- cGACUGCGucaccCAGaUGCuGaCGGCgGCCCg -3'
miRNA:   3'- -UUGACGUu----GUCaACGuC-GUUGgCGGG- -5'
14577 3' -53.3 NC_003521.1 + 111156 0.67 0.972448
Target:  5'- ---cGgGACGGUccGCAuagcGCGGCCGCCCc -3'
miRNA:   3'- uugaCgUUGUCAa-CGU----CGUUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 203717 0.67 0.972448
Target:  5'- ---aGCGACGGcaGCAGCAGCCGg-- -3'
miRNA:   3'- uugaCGUUGUCaaCGUCGUUGGCggg -5'
14577 3' -53.3 NC_003521.1 + 44366 0.67 0.969569
Target:  5'- cGAgUGcCAGCGGagguucgcGCGGCAGCCGgCCg -3'
miRNA:   3'- -UUgAC-GUUGUCaa------CGUCGUUGGCgGG- -5'
14577 3' -53.3 NC_003521.1 + 104251 0.67 0.972448
Target:  5'- ---aGCAcCAGgugcaGCGGCAGCUGCCa -3'
miRNA:   3'- uugaCGUuGUCaa---CGUCGUUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 122614 0.67 0.972448
Target:  5'- ---gGCGACGGcgGCGGCcGCgCGCUCg -3'
miRNA:   3'- uugaCGUUGUCaaCGUCGuUG-GCGGG- -5'
14577 3' -53.3 NC_003521.1 + 66962 0.67 0.971605
Target:  5'- cGCUGCGGCAGgacgagcgcagccugGCAcGCAAgUGCUCg -3'
miRNA:   3'- uUGACGUUGUCaa-------------CGU-CGUUgGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 126490 0.67 0.969569
Target:  5'- cGAgUGCAGCAcGUUGgGGCAGgUGgCCg -3'
miRNA:   3'- -UUgACGUUGU-CAACgUCGUUgGCgGG- -5'
14577 3' -53.3 NC_003521.1 + 196939 0.67 0.972448
Target:  5'- cGGCaGCAcCGGUaGCgugGGCGACgGCCCg -3'
miRNA:   3'- -UUGaCGUuGUCAaCG---UCGUUGgCGGG- -5'
14577 3' -53.3 NC_003521.1 + 22421 0.67 0.975125
Target:  5'- uGCUGC-GCGGc-GUGGCcgaguACCGCCCg -3'
miRNA:   3'- uUGACGuUGUCaaCGUCGu----UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 39150 0.67 0.975125
Target:  5'- uGCUGCcaccGGCGGc-GCAGCucGCgGCCCa -3'
miRNA:   3'- uUGACG----UUGUCaaCGUCGu-UGgCGGG- -5'
14577 3' -53.3 NC_003521.1 + 52163 0.67 0.975125
Target:  5'- ---aGCGACGGUaccGCGGgu-CCGCCCg -3'
miRNA:   3'- uugaCGUUGUCAa--CGUCguuGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.