Results 61 - 80 of 303 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14577 | 3' | -53.3 | NC_003521.1 | + | 46573 | 0.72 | 0.83149 |
Target: 5'- ---aGCggUGGUUGCGGUAGCCcuucuuGCCCa -3' miRNA: 3'- uugaCGuuGUCAACGUCGUUGG------CGGG- -5' |
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14577 | 3' | -53.3 | NC_003521.1 | + | 235261 | 0.72 | 0.823838 |
Target: 5'- uGACaGCGACGGacggaacaacgaugGCGGCGGCCGCgCCg -3' miRNA: 3'- -UUGaCGUUGUCaa------------CGUCGUUGGCG-GG- -5' |
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14577 | 3' | -53.3 | NC_003521.1 | + | 110850 | 0.72 | 0.83149 |
Target: 5'- cGGCaGCGACGGUgcacGUagAGCAGCgGCCCg -3' miRNA: 3'- -UUGaCGUUGUCAa---CG--UCGUUGgCGGG- -5' |
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14577 | 3' | -53.3 | NC_003521.1 | + | 240457 | 0.72 | 0.796416 |
Target: 5'- aGGCggGCAGCGGUcGCAGgcGCCGCCUc -3' miRNA: 3'- -UUGa-CGUUGUCAaCGUCguUGGCGGG- -5' |
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14577 | 3' | -53.3 | NC_003521.1 | + | 137164 | 0.72 | 0.81429 |
Target: 5'- ---gGCcGCGGccGCAGCGGCCGCCg -3' miRNA: 3'- uugaCGuUGUCaaCGUCGUUGGCGGg -5' |
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14577 | 3' | -53.3 | NC_003521.1 | + | 110691 | 0.71 | 0.839818 |
Target: 5'- ---gGCGGCAGcgGCGGCG-CCGCCg -3' miRNA: 3'- uugaCGUUGUCaaCGUCGUuGGCGGg -5' |
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14577 | 3' | -53.3 | NC_003521.1 | + | 165181 | 0.71 | 0.869651 |
Target: 5'- gGACUGCGccGCuGUUGCcgucgucaucgucGGCGacugagccguggcGCCGCCCg -3' miRNA: 3'- -UUGACGU--UGuCAACG-------------UCGU-------------UGGCGGG- -5' |
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14577 | 3' | -53.3 | NC_003521.1 | + | 180109 | 0.71 | 0.86362 |
Target: 5'- ---gGCAGCGGcgUGguGCGacccgcGCCGCCCc -3' miRNA: 3'- uugaCGUUGUCa-ACguCGU------UGGCGGG- -5' |
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14577 | 3' | -53.3 | NC_003521.1 | + | 175227 | 0.71 | 0.871137 |
Target: 5'- uAGCUGCu---GUUGCAGCuguuGCUGUCCc -3' miRNA: 3'- -UUGACGuuguCAACGUCGu---UGGCGGG- -5' |
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14577 | 3' | -53.3 | NC_003521.1 | + | 96525 | 0.71 | 0.862856 |
Target: 5'- gAACcGCAGCGcGUgcgGCAGCAGCgagucgccgugcuCGCCCa -3' miRNA: 3'- -UUGaCGUUGU-CAa--CGUCGUUG-------------GCGGG- -5' |
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14577 | 3' | -53.3 | NC_003521.1 | + | 133063 | 0.71 | 0.86362 |
Target: 5'- cAGCaGCAGCAGUcacaGCcaucGCAGCCGCCa -3' miRNA: 3'- -UUGaCGUUGUCAa---CGu---CGUUGGCGGg -5' |
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14577 | 3' | -53.3 | NC_003521.1 | + | 116870 | 0.71 | 0.86362 |
Target: 5'- -cCUGCGcgcGCAGUggcgcggcUGCGGCGGCgCGCCg -3' miRNA: 3'- uuGACGU---UGUCA--------ACGUCGUUG-GCGGg -5' |
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14577 | 3' | -53.3 | NC_003521.1 | + | 56911 | 0.71 | 0.86362 |
Target: 5'- ---cGCGACAGcgccGCAGC-ACCGCCUc -3' miRNA: 3'- uugaCGUUGUCaa--CGUCGuUGGCGGG- -5' |
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14577 | 3' | -53.3 | NC_003521.1 | + | 141984 | 0.71 | 0.871137 |
Target: 5'- gAGCUGCAGCGGgaGCuggcccgcgccaAGCAGCUGCa- -3' miRNA: 3'- -UUGACGUUGUCaaCG------------UCGUUGGCGgg -5' |
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14577 | 3' | -53.3 | NC_003521.1 | + | 74203 | 0.71 | 0.855889 |
Target: 5'- cAGCUGCuACAGggacaGCAGCAGCagGCCg -3' miRNA: 3'- -UUGACGuUGUCaa---CGUCGUUGg-CGGg -5' |
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14577 | 3' | -53.3 | NC_003521.1 | + | 15744 | 0.71 | 0.855889 |
Target: 5'- -cCUGCAGguGcgcccggGCAGCAGCaUGCCCg -3' miRNA: 3'- uuGACGUUguCaa-----CGUCGUUG-GCGGG- -5' |
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14577 | 3' | -53.3 | NC_003521.1 | + | 198045 | 0.71 | 0.838994 |
Target: 5'- gGGCUGCAcggGCAGgugcuugaGCAGCAGCUuuuucuuGCCCu -3' miRNA: 3'- -UUGACGU---UGUCaa------CGUCGUUGG-------CGGG- -5' |
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14577 | 3' | -53.3 | NC_003521.1 | + | 7627 | 0.71 | 0.847953 |
Target: 5'- gGACUGUcgggaacgaccGACGGUaaCGGCGGCCGCCa -3' miRNA: 3'- -UUGACG-----------UUGUCAacGUCGUUGGCGGg -5' |
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14577 | 3' | -53.3 | NC_003521.1 | + | 71880 | 0.71 | 0.839818 |
Target: 5'- cGACgGCGACAGcgGCGGCccuGCCugcGCCCu -3' miRNA: 3'- -UUGaCGUUGUCaaCGUCGu--UGG---CGGG- -5' |
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14577 | 3' | -53.3 | NC_003521.1 | + | 90835 | 0.71 | 0.839818 |
Target: 5'- --gUGCGGCGGgUGC-GC-GCCGCCCg -3' miRNA: 3'- uugACGUUGUCaACGuCGuUGGCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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