miRNA display CGI


Results 1 - 20 of 303 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14577 3' -53.3 NC_003521.1 + 202398 1.11 0.005181
Target:  5'- cAACUGCAACAGUUGCAGCAACCGCCCg -3'
miRNA:   3'- -UUGACGUUGUCAACGUCGUUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 2170 1.11 0.005181
Target:  5'- cAACUGCAACAGUUGCAGCAACCGCCCg -3'
miRNA:   3'- -UUGACGUUGUCAACGUCGUUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 79656 0.81 0.354512
Target:  5'- uGCUGCAGCGgcgacuGUUGCGaacgacguccGCGACCGCCCg -3'
miRNA:   3'- uUGACGUUGU------CAACGU----------CGUUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 41946 0.8 0.387221
Target:  5'- cGGCUGCGACAGUgcauccggggGCAGCuguucGACCGCCg -3'
miRNA:   3'- -UUGACGUUGUCAa---------CGUCG-----UUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 73132 0.79 0.439857
Target:  5'- uGCUGCAcgGCGGggGCAGCGgcggcggcGCCGCCUc -3'
miRNA:   3'- uUGACGU--UGUCaaCGUCGU--------UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 238658 0.78 0.467658
Target:  5'- uGCUGCAACuGUUGCAGUuGCUGCUg -3'
miRNA:   3'- uUGACGUUGuCAACGUCGuUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 38431 0.78 0.467658
Target:  5'- uGCUGCAACuGUUGCAGUuGCUGCUg -3'
miRNA:   3'- uUGACGUUGuCAACGUCGuUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 110916 0.78 0.486685
Target:  5'- ---cGCAGCAGgcGC-GCGGCCGCCCc -3'
miRNA:   3'- uugaCGUUGUCaaCGuCGUUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 140559 0.78 0.486685
Target:  5'- uGCUGCGGCGGcgGCGGCGACaGCUCg -3'
miRNA:   3'- uUGACGUUGUCaaCGUCGUUGgCGGG- -5'
14577 3' -53.3 NC_003521.1 + 56677 0.77 0.555862
Target:  5'- ---cGCAcCAGgucGCAGUAGCCGCCCa -3'
miRNA:   3'- uugaCGUuGUCaa-CGUCGUUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 224763 0.76 0.576192
Target:  5'- gGGCUcCGGCAGUugUGCAGCAG-CGCCCg -3'
miRNA:   3'- -UUGAcGUUGUCA--ACGUCGUUgGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 155602 0.76 0.586421
Target:  5'- gAGCaGCAGCAGgagGUGGCGACCGCUg -3'
miRNA:   3'- -UUGaCGUUGUCaa-CGUCGUUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 187322 0.76 0.596684
Target:  5'- cGCUGCGACGcc-GCAGCAGCgGCCUc -3'
miRNA:   3'- uUGACGUUGUcaaCGUCGUUGgCGGG- -5'
14577 3' -53.3 NC_003521.1 + 125848 0.76 0.613157
Target:  5'- cAGCUuucGCAACAGgcgacugacgccGCAGCAGCCGCCg -3'
miRNA:   3'- -UUGA---CGUUGUCaa----------CGUCGUUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 47658 0.76 0.617282
Target:  5'- cAGCUGCGcaACAGcaGCAGCAGaCGCCCc -3'
miRNA:   3'- -UUGACGU--UGUCaaCGUCGUUgGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 149833 0.75 0.627602
Target:  5'- cAGCUGCAACA---GCAGCAucggcguucGCCGCCUc -3'
miRNA:   3'- -UUGACGUUGUcaaCGUCGU---------UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 223844 0.75 0.65855
Target:  5'- uACUGCAGCAGaaacUGCAGCucuucguGCUGCCa -3'
miRNA:   3'- uUGACGUUGUCa---ACGUCGu------UGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 76354 0.75 0.65855
Target:  5'- cGGCUGCGGCGGcggcaGCGGCGACCGUg- -3'
miRNA:   3'- -UUGACGUUGUCaa---CGUCGUUGGCGgg -5'
14577 3' -53.3 NC_003521.1 + 141117 0.75 0.679089
Target:  5'- -cCUGCGACc--UGCagaAGCGGCCGCCCg -3'
miRNA:   3'- uuGACGUUGucaACG---UCGUUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 116082 0.75 0.679089
Target:  5'- ---cGCAGCGagUGCAGCGGCUGUCCg -3'
miRNA:   3'- uugaCGUUGUcaACGUCGUUGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.