miRNA display CGI


Results 21 - 40 of 303 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14577 3' -53.3 NC_003521.1 + 87611 0.74 0.689303
Target:  5'- -gUUGUAGCAGgugugGCAGCAgguGCCGCCg -3'
miRNA:   3'- uuGACGUUGUCaa---CGUCGU---UGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 180533 0.74 0.69947
Target:  5'- cGCUGCAGguGUUGUAGUugaAGCCuaGCCCc -3'
miRNA:   3'- uUGACGUUguCAACGUCG---UUGG--CGGG- -5'
14577 3' -53.3 NC_003521.1 + 193169 0.74 0.69947
Target:  5'- uGCUGCuGCuGUUGC-GCAGCUGCCg -3'
miRNA:   3'- uUGACGuUGuCAACGuCGUUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 161235 0.74 0.709579
Target:  5'- uGGCgGCGGCAGcgGCAGUAGCgGCCa -3'
miRNA:   3'- -UUGaCGUUGUCaaCGUCGUUGgCGGg -5'
14577 3' -53.3 NC_003521.1 + 125886 0.74 0.709579
Target:  5'- cGCUGCGcgaGCAGcucucCAGCAGCCGCUCg -3'
miRNA:   3'- uUGACGU---UGUCaac--GUCGUUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 148802 0.74 0.71962
Target:  5'- cGGCUGCGGacGUUcaucgugcGCGGCGACCGCCUg -3'
miRNA:   3'- -UUGACGUUguCAA--------CGUCGUUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 186575 0.74 0.71962
Target:  5'- -cCUGCuugucucCAGaacgGUAGCAGCCGCCCg -3'
miRNA:   3'- uuGACGuu-----GUCaa--CGUCGUUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 98540 0.74 0.71962
Target:  5'- cGCUGCAGCGGcgGCGGguccCAGCCcgaGCCCg -3'
miRNA:   3'- uUGACGUUGUCaaCGUC----GUUGG---CGGG- -5'
14577 3' -53.3 NC_003521.1 + 5525 0.74 0.729586
Target:  5'- cAGCaGCGACGGUgacgGCAGCcggcgcGGCCGCCg -3'
miRNA:   3'- -UUGaCGUUGUCAa---CGUCG------UUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 74903 0.74 0.731569
Target:  5'- aGACggugGCGGCGGUggagucggcccgGCAGCGcggggugguguacccGCCGCCCg -3'
miRNA:   3'- -UUGa---CGUUGUCAa-----------CGUCGU---------------UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 172276 0.73 0.739466
Target:  5'- uGCUGCuGAUAGUUgGCGGCcgcuGCCGCCg -3'
miRNA:   3'- uUGACG-UUGUCAA-CGUCGu---UGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 191692 0.73 0.739466
Target:  5'- ---cGCAACAGUccccGCAGCAGCgGCgCCg -3'
miRNA:   3'- uugaCGUUGUCAa---CGUCGUUGgCG-GG- -5'
14577 3' -53.3 NC_003521.1 + 145579 0.73 0.739466
Target:  5'- uGCUGCGGCGGcacgacGCGGCGGCCGUggCCu -3'
miRNA:   3'- uUGACGUUGUCaa----CGUCGUUGGCG--GG- -5'
14577 3' -53.3 NC_003521.1 + 196726 0.73 0.743392
Target:  5'- cGGCgGCGACGGUggugGCGGCGgcgccugcaccgucuGCUGCCCc -3'
miRNA:   3'- -UUGaCGUUGUCAa---CGUCGU---------------UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 18773 0.73 0.749251
Target:  5'- uGCUGCGACGGcUGguGCcccCCGCCg -3'
miRNA:   3'- uUGACGUUGUCaACguCGuu-GGCGGg -5'
14577 3' -53.3 NC_003521.1 + 143547 0.73 0.749251
Target:  5'- cGCcgGCGACGa--GCAGCAGCCGCCa -3'
miRNA:   3'- uUGa-CGUUGUcaaCGUCGUUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 135739 0.73 0.749251
Target:  5'- cGCUGCuacuGCGGUggugGCGGCGgugggAUCGCCCc -3'
miRNA:   3'- uUGACGu---UGUCAa---CGUCGU-----UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 160795 0.73 0.758931
Target:  5'- cAGCaGCAacaagaaacaGCAGccGCAGCAgaaGCCGCCCa -3'
miRNA:   3'- -UUGaCGU----------UGUCaaCGUCGU---UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 126263 0.73 0.758931
Target:  5'- uACUGCAGCGGgaucucGCAACCGCgCCa -3'
miRNA:   3'- uUGACGUUGUCaacgu-CGUUGGCG-GG- -5'
14577 3' -53.3 NC_003521.1 + 95223 0.73 0.758931
Target:  5'- cGACUGCAGCAGcgagGCcaCGGCCGCCg -3'
miRNA:   3'- -UUGACGUUGUCaa--CGucGUUGGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.