miRNA display CGI


Results 41 - 60 of 303 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14577 3' -53.3 NC_003521.1 + 90998 0.73 0.768497
Target:  5'- uGCUGCuguuGCAGcUGCAGCAggucggucacgGCCGgCCg -3'
miRNA:   3'- uUGACGu---UGUCaACGUCGU-----------UGGCgGG- -5'
14577 3' -53.3 NC_003521.1 + 164542 0.73 0.768497
Target:  5'- gGACUcGCAGCAGcgGCAGCGACucuuccucuCGCCa -3'
miRNA:   3'- -UUGA-CGUUGUCaaCGUCGUUG---------GCGGg -5'
14577 3' -53.3 NC_003521.1 + 154044 0.73 0.769447
Target:  5'- uGCcGCGGCAGgcgcccauaaagccgUGCAGCAGCCGCa- -3'
miRNA:   3'- uUGaCGUUGUCa--------------ACGUCGUUGGCGgg -5'
14577 3' -53.3 NC_003521.1 + 118283 0.73 0.777939
Target:  5'- ---aGCGGCGGUaGCAGCAgcacuaccACCGCCg -3'
miRNA:   3'- uugaCGUUGUCAaCGUCGU--------UGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 102771 0.72 0.786324
Target:  5'- gAGCgGCAGCGGcUGCgcgaugacgcgccGGCGGCCGCCa -3'
miRNA:   3'- -UUGaCGUUGUCaACG-------------UCGUUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 170167 0.72 0.787249
Target:  5'- ---aGCAGCAGcUGCAGCAccaGCCGCa- -3'
miRNA:   3'- uugaCGUUGUCaACGUCGU---UGGCGgg -5'
14577 3' -53.3 NC_003521.1 + 196860 0.72 0.787249
Target:  5'- -uCUGCGucaGCAuGUcgaGCAGCAGCCGCCg -3'
miRNA:   3'- uuGACGU---UGU-CAa--CGUCGUUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 21608 0.72 0.787249
Target:  5'- -cCUGCAACucuGcUGCcuGGCGACCGCCa -3'
miRNA:   3'- uuGACGUUGu--CaACG--UCGUUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 74357 0.72 0.787249
Target:  5'- uGCUGCGcggcuACGGccagUGCGGCGACgGCUCg -3'
miRNA:   3'- uUGACGU-----UGUCa---ACGUCGUUGgCGGG- -5'
14577 3' -53.3 NC_003521.1 + 28854 0.72 0.795506
Target:  5'- gAGCUGCGGCGGc-GCGGCAcggucgaGUCGCCCa -3'
miRNA:   3'- -UUGACGUUGUCaaCGUCGU-------UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 40229 0.72 0.796416
Target:  5'- aGGCggGCAGCGGUcGCAGgcGCCGCCUc -3'
miRNA:   3'- -UUGa-CGUUGUCAaCGUCguUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 240457 0.72 0.796416
Target:  5'- aGGCggGCAGCGGUcGCAGgcGCCGCCUc -3'
miRNA:   3'- -UUGa-CGUUGUCAaCGUCguUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 208210 0.72 0.796416
Target:  5'- gAACUGCAGCAGUcGCAGguACagacaccagaGCCa -3'
miRNA:   3'- -UUGACGUUGUCAaCGUCguUGg---------CGGg -5'
14577 3' -53.3 NC_003521.1 + 74022 0.72 0.805433
Target:  5'- cGCaGCAGCAGcgGCGGCGGCauCGUCCg -3'
miRNA:   3'- uUGaCGUUGUCaaCGUCGUUG--GCGGG- -5'
14577 3' -53.3 NC_003521.1 + 137164 0.72 0.81429
Target:  5'- ---gGCcGCGGccGCAGCGGCCGCCg -3'
miRNA:   3'- uugaCGuUGUCaaCGUCGUUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 70654 0.72 0.81429
Target:  5'- cGCUGCGGCuGgUGCuGCAGCUGCUg -3'
miRNA:   3'- uUGACGUUGuCaACGuCGUUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 190536 0.72 0.81429
Target:  5'- gAGgUGCGGCGGcaGCAGCGGCgGaCCCg -3'
miRNA:   3'- -UUgACGUUGUCaaCGUCGUUGgC-GGG- -5'
14577 3' -53.3 NC_003521.1 + 65604 0.72 0.822978
Target:  5'- cAGCUGCAACA---GCAGCuaaacACgGCCCg -3'
miRNA:   3'- -UUGACGUUGUcaaCGUCGu----UGgCGGG- -5'
14577 3' -53.3 NC_003521.1 + 225749 0.72 0.822978
Target:  5'- cACUcGUAguGCuGUUGCAGCAcgcGCCGCUCg -3'
miRNA:   3'- uUGA-CGU--UGuCAACGUCGU---UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 196519 0.72 0.822978
Target:  5'- ---cGCAGCGGccaCAGCAAcCCGCCCa -3'
miRNA:   3'- uugaCGUUGUCaacGUCGUU-GGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.