miRNA display CGI


Results 61 - 80 of 303 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14577 3' -53.3 NC_003521.1 + 225749 0.72 0.822978
Target:  5'- cACUcGUAguGCuGUUGCAGCAcgcGCCGCUCg -3'
miRNA:   3'- uUGA-CGU--UGuCAACGUCGU---UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 235261 0.72 0.823838
Target:  5'- uGACaGCGACGGacggaacaacgaugGCGGCGGCCGCgCCg -3'
miRNA:   3'- -UUGaCGUUGUCaa------------CGUCGUUGGCG-GG- -5'
14577 3' -53.3 NC_003521.1 + 30241 0.72 0.830647
Target:  5'- cGCUGCAgguccgcGCGGUUGCcguggcGCAGCUGaCCCu -3'
miRNA:   3'- uUGACGU-------UGUCAACGu-----CGUUGGC-GGG- -5'
14577 3' -53.3 NC_003521.1 + 110850 0.72 0.83149
Target:  5'- cGGCaGCGACGGUgcacGUagAGCAGCgGCCCg -3'
miRNA:   3'- -UUGaCGUUGUCAa---CG--UCGUUGgCGGG- -5'
14577 3' -53.3 NC_003521.1 + 46573 0.72 0.83149
Target:  5'- ---aGCggUGGUUGCGGUAGCCcuucuuGCCCa -3'
miRNA:   3'- uugaCGuuGUCAACGUCGUUGG------CGGG- -5'
14577 3' -53.3 NC_003521.1 + 198045 0.71 0.838994
Target:  5'- gGGCUGCAcggGCAGgugcuugaGCAGCAGCUuuuucuuGCCCu -3'
miRNA:   3'- -UUGACGU---UGUCaa------CGUCGUUGG-------CGGG- -5'
14577 3' -53.3 NC_003521.1 + 90835 0.71 0.839818
Target:  5'- --gUGCGGCGGgUGC-GC-GCCGCCCg -3'
miRNA:   3'- uugACGUUGUCaACGuCGuUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 110691 0.71 0.839818
Target:  5'- ---gGCGGCAGcgGCGGCG-CCGCCg -3'
miRNA:   3'- uugaCGUUGUCaaCGUCGUuGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 71880 0.71 0.839818
Target:  5'- cGACgGCGACAGcgGCGGCccuGCCugcGCCCu -3'
miRNA:   3'- -UUGaCGUUGUCaaCGUCGu--UGG---CGGG- -5'
14577 3' -53.3 NC_003521.1 + 7627 0.71 0.847953
Target:  5'- gGACUGUcgggaacgaccGACGGUaaCGGCGGCCGCCa -3'
miRNA:   3'- -UUGACG-----------UUGUCAacGUCGUUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 15744 0.71 0.855889
Target:  5'- -cCUGCAGguGcgcccggGCAGCAGCaUGCCCg -3'
miRNA:   3'- uuGACGUUguCaa-----CGUCGUUG-GCGGG- -5'
14577 3' -53.3 NC_003521.1 + 74203 0.71 0.855889
Target:  5'- cAGCUGCuACAGggacaGCAGCAGCagGCCg -3'
miRNA:   3'- -UUGACGuUGUCaa---CGUCGUUGg-CGGg -5'
14577 3' -53.3 NC_003521.1 + 96525 0.71 0.862856
Target:  5'- gAACcGCAGCGcGUgcgGCAGCAGCgagucgccgugcuCGCCCa -3'
miRNA:   3'- -UUGaCGUUGU-CAa--CGUCGUUG-------------GCGGG- -5'
14577 3' -53.3 NC_003521.1 + 133063 0.71 0.86362
Target:  5'- cAGCaGCAGCAGUcacaGCcaucGCAGCCGCCa -3'
miRNA:   3'- -UUGaCGUUGUCAa---CGu---CGUUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 116870 0.71 0.86362
Target:  5'- -cCUGCGcgcGCAGUggcgcggcUGCGGCGGCgCGCCg -3'
miRNA:   3'- uuGACGU---UGUCA--------ACGUCGUUG-GCGGg -5'
14577 3' -53.3 NC_003521.1 + 180109 0.71 0.86362
Target:  5'- ---gGCAGCGGcgUGguGCGacccgcGCCGCCCc -3'
miRNA:   3'- uugaCGUUGUCa-ACguCGU------UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 56911 0.71 0.86362
Target:  5'- ---cGCGACAGcgccGCAGC-ACCGCCUc -3'
miRNA:   3'- uugaCGUUGUCaa--CGUCGuUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 165181 0.71 0.869651
Target:  5'- gGACUGCGccGCuGUUGCcgucgucaucgucGGCGacugagccguggcGCCGCCCg -3'
miRNA:   3'- -UUGACGU--UGuCAACG-------------UCGU-------------UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 175227 0.71 0.871137
Target:  5'- uAGCUGCu---GUUGCAGCuguuGCUGUCCc -3'
miRNA:   3'- -UUGACGuuguCAACGUCGu---UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 141984 0.71 0.871137
Target:  5'- gAGCUGCAGCGGgaGCuggcccgcgccaAGCAGCUGCa- -3'
miRNA:   3'- -UUGACGUUGUCaaCG------------UCGUUGGCGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.