miRNA display CGI


Results 81 - 100 of 303 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14577 3' -53.3 NC_003521.1 + 199641 0.7 0.878437
Target:  5'- uAAUUGCAGCAGgcagaGCAGCAGCagaGUCg -3'
miRNA:   3'- -UUGACGUUGUCaa---CGUCGUUGg--CGGg -5'
14577 3' -53.3 NC_003521.1 + 98469 0.7 0.878437
Target:  5'- aGGCgGCGGCGGccGCGGCGGCCGUg- -3'
miRNA:   3'- -UUGaCGUUGUCaaCGUCGUUGGCGgg -5'
14577 3' -53.3 NC_003521.1 + 103645 0.7 0.878437
Target:  5'- cAGCggggGCAGCucg-GCGGCGGCCGCUg -3'
miRNA:   3'- -UUGa---CGUUGucaaCGUCGUUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 16725 0.7 0.878437
Target:  5'- ---cGCGGCgAGUU-CGGCGACCGCCg -3'
miRNA:   3'- uugaCGUUG-UCAAcGUCGUUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 156166 0.7 0.878437
Target:  5'- uGCUGCGACGccugUGCGGCAucUCGCCg -3'
miRNA:   3'- uUGACGUUGUca--ACGUCGUu-GGCGGg -5'
14577 3' -53.3 NC_003521.1 + 173538 0.7 0.878437
Target:  5'- ---gGCGuCAGgcGCAGCGGCUGUCCu -3'
miRNA:   3'- uugaCGUuGUCaaCGUCGUUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 68539 0.7 0.885514
Target:  5'- -----gGACGGcgGCAGCGGCCGCCa -3'
miRNA:   3'- uugacgUUGUCaaCGUCGUUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 121221 0.7 0.885514
Target:  5'- -cCUGCAGCAcgagacGCuGCAcccGCCGCCCa -3'
miRNA:   3'- uuGACGUUGUcaa---CGuCGU---UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 232354 0.7 0.885514
Target:  5'- ---aGCAGCAGUcGCGGCGgcACCGCg- -3'
miRNA:   3'- uugaCGUUGUCAaCGUCGU--UGGCGgg -5'
14577 3' -53.3 NC_003521.1 + 137297 0.7 0.892362
Target:  5'- gAGCUGCGGguGgcGCGGCuGCUGCgCg -3'
miRNA:   3'- -UUGACGUUguCaaCGUCGuUGGCGgG- -5'
14577 3' -53.3 NC_003521.1 + 161277 0.7 0.892362
Target:  5'- cGGCgGCAACAGUaGCAGCAGCgagggaGCUUg -3'
miRNA:   3'- -UUGaCGUUGUCAaCGUCGUUGg-----CGGG- -5'
14577 3' -53.3 NC_003521.1 + 101866 0.7 0.892362
Target:  5'- gGACUGCGucauggguccGCAGggGauguaacagaAGCAGCCGCCg -3'
miRNA:   3'- -UUGACGU----------UGUCaaCg---------UCGUUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 144210 0.7 0.892362
Target:  5'- aAGCUGCAGCAG-UGCGcCGA-CGCCUg -3'
miRNA:   3'- -UUGACGUUGUCaACGUcGUUgGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 113013 0.7 0.89636
Target:  5'- gAGCUGCGcgccugGCAGaucauggagcacgUGCGGCuacggccGCCGCCCg -3'
miRNA:   3'- -UUGACGU------UGUCa------------ACGUCGu------UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 105619 0.7 0.898327
Target:  5'- cGCUGCAGCAGggcgUGCucgGGCGugUgcgugaaGCCCa -3'
miRNA:   3'- uUGACGUUGUCa---ACG---UCGUugG-------CGGG- -5'
14577 3' -53.3 NC_003521.1 + 116827 0.7 0.898978
Target:  5'- uGCUGCAGCGGUUucCAGaccugaCGGCCGCCg -3'
miRNA:   3'- uUGACGUUGUCAAc-GUC------GUUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 123921 0.7 0.898978
Target:  5'- cGCUGUucuccacCAGUUGCAGCGG-CGCCg -3'
miRNA:   3'- uUGACGuu-----GUCAACGUCGUUgGCGGg -5'
14577 3' -53.3 NC_003521.1 + 167675 0.7 0.898978
Target:  5'- uGACgUGCucGCGGUUGCGGUGACgaCGCUCg -3'
miRNA:   3'- -UUG-ACGu-UGUCAACGUCGUUG--GCGGG- -5'
14577 3' -53.3 NC_003521.1 + 6078 0.7 0.898978
Target:  5'- --aUGCGACGGccggUGCGGCGGcguuCCGCCa -3'
miRNA:   3'- uugACGUUGUCa---ACGUCGUU----GGCGGg -5'
14577 3' -53.3 NC_003521.1 + 16980 0.7 0.898978
Target:  5'- cGCaGCAGCAGccgcaggGaCAGCAGgCGCCCg -3'
miRNA:   3'- uUGaCGUUGUCaa-----C-GUCGUUgGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.