miRNA display CGI


Results 101 - 120 of 303 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14577 3' -53.3 NC_003521.1 + 16980 0.7 0.898978
Target:  5'- cGCaGCAGCAGccgcaggGaCAGCAGgCGCCCg -3'
miRNA:   3'- uUGaCGUUGUCaa-----C-GUCGUUgGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 198840 0.7 0.904732
Target:  5'- uGCUGCGACcuuaagaAGgcGCGGCGgucgaacaGCUGCCCc -3'
miRNA:   3'- uUGACGUUG-------UCaaCGUCGU--------UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 97214 0.7 0.905359
Target:  5'- --gUGCAGCAG--GCAGCAGCCggugGCCg -3'
miRNA:   3'- uugACGUUGUCaaCGUCGUUGG----CGGg -5'
14577 3' -53.3 NC_003521.1 + 43424 0.7 0.905359
Target:  5'- uACUGCGugcccgACgAGgagGCGGCGGCgGCCCu -3'
miRNA:   3'- uUGACGU------UG-UCaa-CGUCGUUGgCGGG- -5'
14577 3' -53.3 NC_003521.1 + 53509 0.7 0.905359
Target:  5'- uGCUGCGGC-GUcGCAGCGGCCgauggugcuGUCCg -3'
miRNA:   3'- uUGACGUUGuCAaCGUCGUUGG---------CGGG- -5'
14577 3' -53.3 NC_003521.1 + 145897 0.7 0.905359
Target:  5'- cGCcgGCGGCGGgaGCAGCGGCgGUUCg -3'
miRNA:   3'- uUGa-CGUUGUCaaCGUCGUUGgCGGG- -5'
14577 3' -53.3 NC_003521.1 + 17481 0.7 0.905359
Target:  5'- cGACgGCAcCGGUaGCGGCG-CCGCCg -3'
miRNA:   3'- -UUGaCGUuGUCAaCGUCGUuGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 33262 0.69 0.909073
Target:  5'- ---cGCAGCAGgccggcgcgaucgUGCAGCAGCUGCg- -3'
miRNA:   3'- uugaCGUUGUCa------------ACGUCGUUGGCGgg -5'
14577 3' -53.3 NC_003521.1 + 59604 0.69 0.911501
Target:  5'- gGACgguagugGCGGCGGccccgGCGGCGACCGCg- -3'
miRNA:   3'- -UUGa------CGUUGUCaa---CGUCGUUGGCGgg -5'
14577 3' -53.3 NC_003521.1 + 240620 0.69 0.911501
Target:  5'- ---cGCGGCGGcgUGCGGCGgGCCGgCCg -3'
miRNA:   3'- uugaCGUUGUCa-ACGUCGU-UGGCgGG- -5'
14577 3' -53.3 NC_003521.1 + 71 0.69 0.911501
Target:  5'- ---cGCGGCGGcgUGCGGCGgGCCGgCCg -3'
miRNA:   3'- uugaCGUUGUCa-ACGUCGU-UGGCgGG- -5'
14577 3' -53.3 NC_003521.1 + 164209 0.69 0.911501
Target:  5'- cGGCgggGCGGCGGUgGUAGCGGCgGCUg -3'
miRNA:   3'- -UUGa--CGUUGUCAaCGUCGUUGgCGGg -5'
14577 3' -53.3 NC_003521.1 + 223850 0.69 0.911501
Target:  5'- -cCUGCGGCuGcUGCuGCGGCUGUCCc -3'
miRNA:   3'- uuGACGUUGuCaACGuCGUUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 106296 0.69 0.911501
Target:  5'- ---gGCAACAGcaaccagGCGGCGGCCGUgCg -3'
miRNA:   3'- uugaCGUUGUCaa-----CGUCGUUGGCGgG- -5'
14577 3' -53.3 NC_003521.1 + 200299 0.69 0.911501
Target:  5'- ---cGCGGCGGcgUGCGGCGgGCCGgCCg -3'
miRNA:   3'- uugaCGUUGUCa-ACGUCGU-UGGCgGG- -5'
14577 3' -53.3 NC_003521.1 + 161171 0.69 0.911501
Target:  5'- ---cGCAACAGUcgccgcUGCAGCAGCagacgaCGCCg -3'
miRNA:   3'- uugaCGUUGUCA------ACGUCGUUG------GCGGg -5'
14577 3' -53.3 NC_003521.1 + 52793 0.69 0.917402
Target:  5'- ---gGCGGCGG-UGCGGCuccaccugGACCGCCUu -3'
miRNA:   3'- uugaCGUUGUCaACGUCG--------UUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 212228 0.69 0.917402
Target:  5'- gGAUgGUGGCGGUgcGCAGCAgcccGCCGUCCg -3'
miRNA:   3'- -UUGaCGUUGUCAa-CGUCGU----UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 228572 0.69 0.917402
Target:  5'- gGACUGCAGCucg-GCAGCGagagugaggucuGCCGUCg -3'
miRNA:   3'- -UUGACGUUGucaaCGUCGU------------UGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 196986 0.69 0.921949
Target:  5'- -cCUGUGACGGgcccgcggccgGCGGCGGCUGaCCCg -3'
miRNA:   3'- uuGACGUUGUCaa---------CGUCGUUGGC-GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.