miRNA display CGI


Results 21 - 40 of 303 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14577 3' -53.3 NC_003521.1 + 44408 0.66 0.983961
Target:  5'- cGACaGCGACuGUcugUGCcGCugcCCGCCCa -3'
miRNA:   3'- -UUGaCGUUGuCA---ACGuCGuu-GGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 26176 0.66 0.983961
Target:  5'- uGCUGcCAACGaa-GC-GCAGCCGCUCg -3'
miRNA:   3'- uUGAC-GUUGUcaaCGuCGUUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 130781 0.66 0.983961
Target:  5'- uGCUGuCGGCGGggucaccGCAGCG--CGCCCa -3'
miRNA:   3'- uUGAC-GUUGUCaa-----CGUCGUugGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 78477 0.66 0.983961
Target:  5'- gGGCUGCGcgcccACGcccGCAGUcGCCGCCUg -3'
miRNA:   3'- -UUGACGU-----UGUcaaCGUCGuUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 33203 0.66 0.983961
Target:  5'- ---aGguGCAGgc-CGGCgAGCCGCCCa -3'
miRNA:   3'- uugaCguUGUCaacGUCG-UUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 23893 0.66 0.983961
Target:  5'- ---gGCAACAGcguaUGgGGuCGACCGCCUc -3'
miRNA:   3'- uugaCGUUGUCa---ACgUC-GUUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 171497 0.66 0.983961
Target:  5'- uACcGCGACAGcUGUuuggaaAGCGaggacggcGCCGCCCu -3'
miRNA:   3'- uUGaCGUUGUCaACG------UCGU--------UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 60011 0.66 0.983961
Target:  5'- -cCUGCAGCAGcgcGaCAGC-ACCGgCCu -3'
miRNA:   3'- uuGACGUUGUCaa-C-GUCGuUGGCgGG- -5'
14577 3' -53.3 NC_003521.1 + 106552 0.66 0.983961
Target:  5'- uGCUGgAGCAGcUGCAG-AACCuGCaCCg -3'
miRNA:   3'- uUGACgUUGUCaACGUCgUUGG-CG-GG- -5'
14577 3' -53.3 NC_003521.1 + 112328 0.66 0.983961
Target:  5'- cGCUGUcGCAGgccgGCGcGCAcagccucacgccGCUGCCCa -3'
miRNA:   3'- uUGACGuUGUCaa--CGU-CGU------------UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 127521 0.66 0.982219
Target:  5'- -gUUGCggUAGUggaagagcaugugcgGCGGCAGCaCGCCg -3'
miRNA:   3'- uuGACGuuGUCAa--------------CGUCGUUG-GCGGg -5'
14577 3' -53.3 NC_003521.1 + 74792 0.66 0.982017
Target:  5'- cGGCgGCAGCGGUaGCGGCGAgaCGCg- -3'
miRNA:   3'- -UUGaCGUUGUCAaCGUCGUUg-GCGgg -5'
14577 3' -53.3 NC_003521.1 + 23689 0.66 0.982017
Target:  5'- cACUGCAACcgacuGUUGguGUGuCCGCgCg -3'
miRNA:   3'- uUGACGUUGu----CAACguCGUuGGCGgG- -5'
14577 3' -53.3 NC_003521.1 + 77933 0.66 0.982017
Target:  5'- -cCUGCAgGCAGUaGCGGCccaccugcGCgCGCCCc -3'
miRNA:   3'- uuGACGU-UGUCAaCGUCGu-------UG-GCGGG- -5'
14577 3' -53.3 NC_003521.1 + 70749 0.66 0.982017
Target:  5'- cAGCUGCAGCGc--GCcGCGGCCGaucaCCa -3'
miRNA:   3'- -UUGACGUUGUcaaCGuCGUUGGCg---GG- -5'
14577 3' -53.3 NC_003521.1 + 156547 0.66 0.982017
Target:  5'- -cCUGUGACAacgUGCucagccugcccAGCGACCGCCa -3'
miRNA:   3'- uuGACGUUGUca-ACG-----------UCGUUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 114945 0.66 0.982017
Target:  5'- gAGCUGCucgcGCAGcgGCGGCuGCUGCg- -3'
miRNA:   3'- -UUGACGu---UGUCaaCGUCGuUGGCGgg -5'
14577 3' -53.3 NC_003521.1 + 136403 0.66 0.982017
Target:  5'- cGCggGCcGCGuGUgagGCAGaCAGCCGUCCg -3'
miRNA:   3'- uUGa-CGuUGU-CAa--CGUC-GUUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 234292 0.66 0.982017
Target:  5'- -cCUGgGGCGGgacGCAG--ACCGCCCu -3'
miRNA:   3'- uuGACgUUGUCaa-CGUCguUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 7747 0.66 0.982017
Target:  5'- ---aGCGGCGGagGCGGCGGCaGUCCc -3'
miRNA:   3'- uugaCGUUGUCaaCGUCGUUGgCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.