miRNA display CGI


Results 41 - 60 of 303 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14577 3' -53.3 NC_003521.1 + 234292 0.66 0.982017
Target:  5'- -cCUGgGGCGGgacGCAG--ACCGCCCu -3'
miRNA:   3'- uuGACgUUGUCaa-CGUCguUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 168565 0.66 0.982017
Target:  5'- gGGCUGCG--GGUaagGUGGCGGCUGaCCCa -3'
miRNA:   3'- -UUGACGUugUCAa--CGUCGUUGGC-GGG- -5'
14577 3' -53.3 NC_003521.1 + 70749 0.66 0.982017
Target:  5'- cAGCUGCAGCGc--GCcGCGGCCGaucaCCa -3'
miRNA:   3'- -UUGACGUUGUcaaCGuCGUUGGCg---GG- -5'
14577 3' -53.3 NC_003521.1 + 136403 0.66 0.982017
Target:  5'- cGCggGCcGCGuGUgagGCAGaCAGCCGUCCg -3'
miRNA:   3'- uUGa-CGuUGU-CAa--CGUC-GUUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 23689 0.66 0.982017
Target:  5'- cACUGCAACcgacuGUUGguGUGuCCGCgCg -3'
miRNA:   3'- uUGACGUUGu----CAACguCGUuGGCGgG- -5'
14577 3' -53.3 NC_003521.1 + 185353 0.66 0.981814
Target:  5'- gGACgGCAaggcggcGCAGUgccucuucCAGCGcGCCGCCCa -3'
miRNA:   3'- -UUGaCGU-------UGUCAac------GUCGU-UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 98122 0.66 0.981608
Target:  5'- gGACUcGCGGCAGcggaguccgugGUAGCugcuGCCGCCg -3'
miRNA:   3'- -UUGA-CGUUGUCaa---------CGUCGu---UGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 166544 0.66 0.981192
Target:  5'- cAGCUGCGACGGaUUguuguacagcaugaGCAGCGACuccaggaacccguCGUCCa -3'
miRNA:   3'- -UUGACGUUGUC-AA--------------CGUCGUUG-------------GCGGG- -5'
14577 3' -53.3 NC_003521.1 + 181525 0.66 0.979902
Target:  5'- gGugUGCGcgaagacuaGCGGgccGCcGCGACCGCUCa -3'
miRNA:   3'- -UugACGU---------UGUCaa-CGuCGUUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 191144 0.66 0.979902
Target:  5'- uGACgGCGACAGc-GCcGCGcUCGCCCg -3'
miRNA:   3'- -UUGaCGUUGUCaaCGuCGUuGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 201811 0.66 0.979902
Target:  5'- cGCUGCuGACGGccgUGCAGCGccacauccaccAgCGCCUg -3'
miRNA:   3'- uUGACG-UUGUCa--ACGUCGU-----------UgGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 120230 0.66 0.979902
Target:  5'- cGCUacCGGCAGgaGcCGGCGGCCGCgCCg -3'
miRNA:   3'- uUGAc-GUUGUCaaC-GUCGUUGGCG-GG- -5'
14577 3' -53.3 NC_003521.1 + 1584 0.66 0.979902
Target:  5'- cGCUGCuGACGGccgUGCAGCGccacauccaccAgCGCCUg -3'
miRNA:   3'- uUGACG-UUGUCa--ACGUCGU-----------UgGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 61945 0.66 0.979902
Target:  5'- aGAC-GCAACAGgcgGCcucGCucuACUGCCCg -3'
miRNA:   3'- -UUGaCGUUGUCaa-CGu--CGu--UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 136054 0.66 0.979902
Target:  5'- --gUGCGACcuggGCAGCGGCUGCgCg -3'
miRNA:   3'- uugACGUUGucaaCGUCGUUGGCGgG- -5'
14577 3' -53.3 NC_003521.1 + 193381 0.66 0.979902
Target:  5'- gGAgUGCGGCGcccgGCuGCAugUGCCCu -3'
miRNA:   3'- -UUgACGUUGUcaa-CGuCGUugGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 198797 0.66 0.979902
Target:  5'- cAGCUGCGugGugccgGCGGCGucugucguGCCGCCg -3'
miRNA:   3'- -UUGACGUugUcaa--CGUCGU--------UGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 49575 0.66 0.979902
Target:  5'- uGCcGCGugGGccGCGGCG-CCGCCUc -3'
miRNA:   3'- uUGaCGUugUCaaCGUCGUuGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 137820 0.66 0.979233
Target:  5'- cAGCUGCAuuauuaaggcgcucACGcc-GCGGCuggGCCGCCCc -3'
miRNA:   3'- -UUGACGU--------------UGUcaaCGUCGu--UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 123605 0.66 0.977607
Target:  5'- -cUUGCGucGCAGggGCAGCcGCCGUa- -3'
miRNA:   3'- uuGACGU--UGUCaaCGUCGuUGGCGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.