miRNA display CGI


Results 61 - 80 of 303 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14577 3' -53.3 NC_003521.1 + 106997 0.66 0.977607
Target:  5'- -uCUGUAugGuGUUGCGGCAcuGCUGCUUc -3'
miRNA:   3'- uuGACGUugU-CAACGUCGU--UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 130218 0.66 0.977607
Target:  5'- ---cGguACAGaUGCAGCcGCCcucGCCCa -3'
miRNA:   3'- uugaCguUGUCaACGUCGuUGG---CGGG- -5'
14577 3' -53.3 NC_003521.1 + 123605 0.66 0.977607
Target:  5'- -cUUGCGucGCAGggGCAGCcGCCGUa- -3'
miRNA:   3'- uuGACGU--UGUCaaCGUCGuUGGCGgg -5'
14577 3' -53.3 NC_003521.1 + 124042 0.66 0.977607
Target:  5'- aGACgGcCAGC-GUgccGCGGCGGCgGCCCa -3'
miRNA:   3'- -UUGaC-GUUGuCAa--CGUCGUUGgCGGG- -5'
14577 3' -53.3 NC_003521.1 + 120491 0.66 0.977607
Target:  5'- ---aGCAGCAGcaGCGGCcACCGCa- -3'
miRNA:   3'- uugaCGUUGUCaaCGUCGuUGGCGgg -5'
14577 3' -53.3 NC_003521.1 + 44341 0.67 0.976141
Target:  5'- aAGCUGCAccgcauccgcgacgcGCuGggGCuGCGGCCcacGCCCg -3'
miRNA:   3'- -UUGACGU---------------UGuCaaCGuCGUUGG---CGGG- -5'
14577 3' -53.3 NC_003521.1 + 187158 0.67 0.976141
Target:  5'- cGGCgGCGGCAGgagcggaagcaacgUGCGGaGACgGCCCg -3'
miRNA:   3'- -UUGaCGUUGUCa-------------ACGUCgUUGgCGGG- -5'
14577 3' -53.3 NC_003521.1 + 239378 0.67 0.975125
Target:  5'- uGCUGCcaccGGCGGc-GCAGCucGCgGCCCa -3'
miRNA:   3'- uUGACG----UUGUCaaCGUCGu-UGgCGGG- -5'
14577 3' -53.3 NC_003521.1 + 52163 0.67 0.975125
Target:  5'- ---aGCGACGGUaccGCGGgu-CCGCCCg -3'
miRNA:   3'- uugaCGUUGUCAa--CGUCguuGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 127892 0.67 0.975125
Target:  5'- ---cGCggUAGgcGUAGUAGuuGCCCg -3'
miRNA:   3'- uugaCGuuGUCaaCGUCGUUggCGGG- -5'
14577 3' -53.3 NC_003521.1 + 39150 0.67 0.975125
Target:  5'- uGCUGCcaccGGCGGc-GCAGCucGCgGCCCa -3'
miRNA:   3'- uUGACG----UUGUCaaCGUCGu-UGgCGGG- -5'
14577 3' -53.3 NC_003521.1 + 170964 0.67 0.975125
Target:  5'- cGCUGCGcgGCGGccucaucgGCAGCGucaucgaccuGCCGCUCu -3'
miRNA:   3'- uUGACGU--UGUCaa------CGUCGU----------UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 115382 0.67 0.975125
Target:  5'- gGGCcgGCAuguGCAGggcGCgGGCGGCCGCCa -3'
miRNA:   3'- -UUGa-CGU---UGUCaa-CG-UCGUUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 22421 0.67 0.975125
Target:  5'- uGCUGC-GCGGc-GUGGCcgaguACCGCCCg -3'
miRNA:   3'- uUGACGuUGUCaaCGUCGu----UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 26635 0.67 0.975125
Target:  5'- gGACgUGCGGCAcGUUGCcaccgAACUGCCCg -3'
miRNA:   3'- -UUG-ACGUUGU-CAACGucg--UUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 120910 0.67 0.975125
Target:  5'- ---gGCGGCuGcUUGCGuuuGCGGCUGCCCg -3'
miRNA:   3'- uugaCGUUGuC-AACGU---CGUUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 124485 0.67 0.975125
Target:  5'- ---gGCGGCuGGUcGUAGCGcgugaggaaGCCGCCCa -3'
miRNA:   3'- uugaCGUUG-UCAaCGUCGU---------UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 83760 0.67 0.975125
Target:  5'- -cCUGgGACAGggugGCGGCGccccCCGCCg -3'
miRNA:   3'- uuGACgUUGUCaa--CGUCGUu---GGCGGg -5'
14577 3' -53.3 NC_003521.1 + 57984 0.67 0.975125
Target:  5'- cGCUGCu---GUUGuCAGCG-CCGCCg -3'
miRNA:   3'- uUGACGuuguCAAC-GUCGUuGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 58418 0.67 0.975125
Target:  5'- --aUGCGGCGGUUgacgaagccGCAGCG-CUGCCg -3'
miRNA:   3'- uugACGUUGUCAA---------CGUCGUuGGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.