miRNA display CGI


Results 81 - 100 of 303 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14577 3' -53.3 NC_003521.1 + 57984 0.67 0.975125
Target:  5'- cGCUGCu---GUUGuCAGCG-CCGCCg -3'
miRNA:   3'- uUGACGuuguCAAC-GUCGUuGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 26635 0.67 0.975125
Target:  5'- gGACgUGCGGCAcGUUGCcaccgAACUGCCCg -3'
miRNA:   3'- -UUG-ACGUUGU-CAACGucg--UUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 52163 0.67 0.975125
Target:  5'- ---aGCGACGGUaccGCGGgu-CCGCCCg -3'
miRNA:   3'- uugaCGUUGUCAa--CGUCguuGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 63895 0.67 0.973543
Target:  5'- gAGCUGCAGCAGUugggcacccacaagaUGCuGgAGCUGCa- -3'
miRNA:   3'- -UUGACGUUGUCA---------------ACGuCgUUGGCGgg -5'
14577 3' -53.3 NC_003521.1 + 203717 0.67 0.972448
Target:  5'- ---aGCGACGGcaGCAGCAGCCGg-- -3'
miRNA:   3'- uugaCGUUGUCaaCGUCGUUGGCggg -5'
14577 3' -53.3 NC_003521.1 + 74694 0.67 0.972448
Target:  5'- cAGCaGCGACGGcggcgccGCGGCAGCgGCUCc -3'
miRNA:   3'- -UUGaCGUUGUCaa-----CGUCGUUGgCGGG- -5'
14577 3' -53.3 NC_003521.1 + 75319 0.67 0.972448
Target:  5'- cGACUGCGucaccCAGaUGCuGaCGGCgGCCCg -3'
miRNA:   3'- -UUGACGUu----GUCaACGuC-GUUGgCGGG- -5'
14577 3' -53.3 NC_003521.1 + 111156 0.67 0.972448
Target:  5'- ---cGgGACGGUccGCAuagcGCGGCCGCCCc -3'
miRNA:   3'- uugaCgUUGUCAa-CGU----CGUUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 104251 0.67 0.972448
Target:  5'- ---aGCAcCAGgugcaGCGGCAGCUGCCa -3'
miRNA:   3'- uugaCGUuGUCaa---CGUCGUUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 122528 0.67 0.972448
Target:  5'- aGGCcgGCGGCGGUgguagugcUGCuGCuACCGCCg -3'
miRNA:   3'- -UUGa-CGUUGUCA--------ACGuCGuUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 196939 0.67 0.972448
Target:  5'- cGGCaGCAcCGGUaGCgugGGCGACgGCCCg -3'
miRNA:   3'- -UUGaCGUuGUCAaCG---UCGUUGgCGGG- -5'
14577 3' -53.3 NC_003521.1 + 184661 0.67 0.972448
Target:  5'- cGCUGCGuguucgcgcGCAGcgaGCAGCAcgagccgcACuCGCCCg -3'
miRNA:   3'- uUGACGU---------UGUCaa-CGUCGU--------UG-GCGGG- -5'
14577 3' -53.3 NC_003521.1 + 122614 0.67 0.972448
Target:  5'- ---gGCGACGGcgGCGGCcGCgCGCUCg -3'
miRNA:   3'- uugaCGUUGUCaaCGUCGuUG-GCGGG- -5'
14577 3' -53.3 NC_003521.1 + 33040 0.67 0.972169
Target:  5'- --gUGCcAUAGa-GCAGCAcguggauGCCGCCCa -3'
miRNA:   3'- uugACGuUGUCaaCGUCGU-------UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 66962 0.67 0.971605
Target:  5'- cGCUGCGGCAGgacgagcgcagccugGCAcGCAAgUGCUCg -3'
miRNA:   3'- uUGACGUUGUCaa-------------CGU-CGUUgGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 126490 0.67 0.969569
Target:  5'- cGAgUGCAGCAcGUUGgGGCAGgUGgCCg -3'
miRNA:   3'- -UUgACGUUGU-CAACgUCGUUgGCgGG- -5'
14577 3' -53.3 NC_003521.1 + 101853 0.67 0.969569
Target:  5'- gAGCgGCAGCAGgcgGCGGUAcaugaaguaGCCGUCg -3'
miRNA:   3'- -UUGaCGUUGUCaa-CGUCGU---------UGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 43818 0.67 0.969569
Target:  5'- ---cGCAGCAGccggGuCAGCcGCCGCCg -3'
miRNA:   3'- uugaCGUUGUCaa--C-GUCGuUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 44366 0.67 0.969569
Target:  5'- cGAgUGcCAGCGGagguucgcGCGGCAGCCGgCCg -3'
miRNA:   3'- -UUgAC-GUUGUCaa------CGUCGUUGGCgGG- -5'
14577 3' -53.3 NC_003521.1 + 158880 0.67 0.966481
Target:  5'- uAACUGCAugG--UGaCGGUGaccACCGCCCg -3'
miRNA:   3'- -UUGACGUugUcaAC-GUCGU---UGGCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.