miRNA display CGI


Results 1 - 20 of 303 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14577 3' -53.3 NC_003521.1 + 71 0.69 0.911501
Target:  5'- ---cGCGGCGGcgUGCGGCGgGCCGgCCg -3'
miRNA:   3'- uugaCGUUGUCa-ACGUCGU-UGGCgGG- -5'
14577 3' -53.3 NC_003521.1 + 354 0.68 0.959656
Target:  5'- gAGCUGC--CGGagGCGGCGccugcgaccGCUGCCCg -3'
miRNA:   3'- -UUGACGuuGUCaaCGUCGU---------UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 1584 0.66 0.979902
Target:  5'- cGCUGCuGACGGccgUGCAGCGccacauccaccAgCGCCUg -3'
miRNA:   3'- uUGACG-UUGUCa--ACGUCGU-----------UgGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 2170 1.11 0.005181
Target:  5'- cAACUGCAACAGUUGCAGCAACCGCCCg -3'
miRNA:   3'- -UUGACGUUGUCAACGUCGUUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 5525 0.74 0.729586
Target:  5'- cAGCaGCGACGGUgacgGCAGCcggcgcGGCCGCCg -3'
miRNA:   3'- -UUGaCGUUGUCAa---CGUCG------UUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 6078 0.7 0.898978
Target:  5'- --aUGCGACGGccggUGCGGCGGcguuCCGCCa -3'
miRNA:   3'- uugACGUUGUCa---ACGUCGUU----GGCGGg -5'
14577 3' -53.3 NC_003521.1 + 7627 0.71 0.847953
Target:  5'- gGACUGUcgggaacgaccGACGGUaaCGGCGGCCGCCa -3'
miRNA:   3'- -UUGACG-----------UUGUCAacGUCGUUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 7747 0.66 0.982017
Target:  5'- ---aGCGGCGGagGCGGCGGCaGUCCc -3'
miRNA:   3'- uugaCGUUGUCaaCGUCGUUGgCGGG- -5'
14577 3' -53.3 NC_003521.1 + 8152 0.68 0.951929
Target:  5'- -uCUGCAGCGGUacagUGCAGUuACgGCgCg -3'
miRNA:   3'- uuGACGUUGUCA----ACGUCGuUGgCGgG- -5'
14577 3' -53.3 NC_003521.1 + 14452 0.69 0.93365
Target:  5'- -cCUGCGGCGGcguCAGCcGCCGCUCc -3'
miRNA:   3'- uuGACGUUGUCaacGUCGuUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 14636 0.66 0.98574
Target:  5'- --gUGCAGCAGcUGCAGUgcguCUgGCCCu -3'
miRNA:   3'- uugACGUUGUCaACGUCGuu--GG-CGGG- -5'
14577 3' -53.3 NC_003521.1 + 15744 0.71 0.855889
Target:  5'- -cCUGCAGguGcgcccggGCAGCAGCaUGCCCg -3'
miRNA:   3'- uuGACGUUguCaa-----CGUCGUUG-GCGGG- -5'
14577 3' -53.3 NC_003521.1 + 15877 0.67 0.966481
Target:  5'- gAGCUGguGCucuGUauggGCGGCAGCaCGCgCCu -3'
miRNA:   3'- -UUGACguUGu--CAa---CGUCGUUG-GCG-GG- -5'
14577 3' -53.3 NC_003521.1 + 16725 0.7 0.878437
Target:  5'- ---cGCGGCgAGUU-CGGCGACCGCCg -3'
miRNA:   3'- uugaCGUUG-UCAAcGUCGUUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 16980 0.7 0.898978
Target:  5'- cGCaGCAGCAGccgcaggGaCAGCAGgCGCCCg -3'
miRNA:   3'- uUGaCGUUGUCaa-----C-GUCGUUgGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 17481 0.7 0.905359
Target:  5'- cGACgGCAcCGGUaGCGGCG-CCGCCg -3'
miRNA:   3'- -UUGaCGUuGUCAaCGUCGUuGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 18773 0.73 0.749251
Target:  5'- uGCUGCGACGGcUGguGCcccCCGCCg -3'
miRNA:   3'- uUGACGUUGUCaACguCGuu-GGCGGg -5'
14577 3' -53.3 NC_003521.1 + 18801 0.68 0.955907
Target:  5'- uACUGCGuucgcccugccuGCAGaUGCugAGCGACCGCaaCCg -3'
miRNA:   3'- uUGACGU------------UGUCaACG--UCGUUGGCG--GG- -5'
14577 3' -53.3 NC_003521.1 + 21608 0.72 0.787249
Target:  5'- -cCUGCAACucuGcUGCcuGGCGACCGCCa -3'
miRNA:   3'- uuGACGUUGu--CaACG--UCGUUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 22421 0.67 0.975125
Target:  5'- uGCUGC-GCGGc-GUGGCcgaguACCGCCCg -3'
miRNA:   3'- uUGACGuUGUCaaCGUCGu----UGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.