miRNA display CGI


Results 21 - 40 of 303 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14577 3' -53.3 NC_003521.1 + 23689 0.66 0.982017
Target:  5'- cACUGCAACcgacuGUUGguGUGuCCGCgCg -3'
miRNA:   3'- uUGACGUUGu----CAACguCGUuGGCGgG- -5'
14577 3' -53.3 NC_003521.1 + 23893 0.66 0.983961
Target:  5'- ---gGCAACAGcguaUGgGGuCGACCGCCUc -3'
miRNA:   3'- uugaCGUUGUCa---ACgUC-GUUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 26176 0.66 0.983961
Target:  5'- uGCUGcCAACGaa-GC-GCAGCCGCUCg -3'
miRNA:   3'- uUGAC-GUUGUcaaCGuCGUUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 26457 0.68 0.959656
Target:  5'- -cCUGCAACGGcgugGCcugggAGC-ACCGCCUg -3'
miRNA:   3'- uuGACGUUGUCaa--CG-----UCGuUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 26635 0.67 0.975125
Target:  5'- gGACgUGCGGCAcGUUGCcaccgAACUGCCCg -3'
miRNA:   3'- -UUG-ACGUUGU-CAACGucg--UUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 27187 0.68 0.959656
Target:  5'- -cCUGCucuGguGUUucauccugcugcGCGGCGACCGCCa -3'
miRNA:   3'- uuGACGu--UguCAA------------CGUCGUUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 28151 0.67 0.975125
Target:  5'- ---gGCGACg---GCGGCGACCauGCCCg -3'
miRNA:   3'- uugaCGUUGucaaCGUCGUUGG--CGGG- -5'
14577 3' -53.3 NC_003521.1 + 28854 0.72 0.795506
Target:  5'- gAGCUGCGGCGGc-GCGGCAcggucgaGUCGCCCa -3'
miRNA:   3'- -UUGACGUUGUCaaCGUCGU-------UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 30241 0.72 0.830647
Target:  5'- cGCUGCAgguccgcGCGGUUGCcguggcGCAGCUGaCCCu -3'
miRNA:   3'- uUGACGU-------UGUCAACGu-----CGUUGGC-GGG- -5'
14577 3' -53.3 NC_003521.1 + 30907 0.68 0.950273
Target:  5'- gAACUGCGGCAGgcgagagcgguccUGgGGCAGUCGCCg -3'
miRNA:   3'- -UUGACGUUGUCa------------ACgUCGUUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 31726 0.67 0.966481
Target:  5'- uGCUGgGACGcc-GCGGCcACCGCCUc -3'
miRNA:   3'- uUGACgUUGUcaaCGUCGuUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 33040 0.67 0.972169
Target:  5'- --gUGCcAUAGa-GCAGCAcguggauGCCGCCCa -3'
miRNA:   3'- uugACGuUGUCaaCGUCGU-------UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 33203 0.66 0.983961
Target:  5'- ---aGguGCAGgc-CGGCgAGCCGCCCa -3'
miRNA:   3'- uugaCguUGUCaacGUCG-UUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 33262 0.69 0.909073
Target:  5'- ---cGCAGCAGgccggcgcgaucgUGCAGCAGCUGCg- -3'
miRNA:   3'- uugaCGUUGUCa------------ACGUCGUUGGCGgg -5'
14577 3' -53.3 NC_003521.1 + 35736 0.68 0.947718
Target:  5'- -cCUGCAgaucagccacauGCGGUUGCGGCuggaCGCuCCa -3'
miRNA:   3'- uuGACGU------------UGUCAACGUCGuug-GCG-GG- -5'
14577 3' -53.3 NC_003521.1 + 36006 0.69 0.932124
Target:  5'- cGACgGCGACGGagGUGGCGGCCccacgaccgucuugGCCCu -3'
miRNA:   3'- -UUGaCGUUGUCaaCGUCGUUGG--------------CGGG- -5'
14577 3' -53.3 NC_003521.1 + 36771 0.66 0.985223
Target:  5'- cGACUGCGGCGacugGCAGgGccacgcgcugcggaGCCGCUCg -3'
miRNA:   3'- -UUGACGUUGUcaa-CGUCgU--------------UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 38431 0.78 0.467658
Target:  5'- uGCUGCAACuGUUGCAGUuGCUGCUg -3'
miRNA:   3'- uUGACGUUGuCAACGUCGuUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 38501 0.66 0.987365
Target:  5'- cACcgGCAGCAGUUccaGCAGCAGaaGUCg -3'
miRNA:   3'- uUGa-CGUUGUCAA---CGUCGUUggCGGg -5'
14577 3' -53.3 NC_003521.1 + 39150 0.67 0.975125
Target:  5'- uGCUGCcaccGGCGGc-GCAGCucGCgGCCCa -3'
miRNA:   3'- uUGACG----UUGUCaaCGUCGu-UGgCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.