miRNA display CGI


Results 41 - 60 of 303 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14577 3' -53.3 NC_003521.1 + 40229 0.72 0.796416
Target:  5'- aGGCggGCAGCGGUcGCAGgcGCCGCCUc -3'
miRNA:   3'- -UUGa-CGUUGUCAaCGUCguUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 41946 0.8 0.387221
Target:  5'- cGGCUGCGACAGUgcauccggggGCAGCuguucGACCGCCg -3'
miRNA:   3'- -UUGACGUUGUCAa---------CGUCG-----UUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 42001 0.68 0.959656
Target:  5'- ---cGCAGCAGcaacacgGCGGCAcgacagacGCCGCCg -3'
miRNA:   3'- uugaCGUUGUCaa-----CGUCGU--------UGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 43424 0.7 0.905359
Target:  5'- uACUGCGugcccgACgAGgagGCGGCGGCgGCCCu -3'
miRNA:   3'- uUGACGU------UG-UCaa-CGUCGUUGgCGGG- -5'
14577 3' -53.3 NC_003521.1 + 43773 0.68 0.947718
Target:  5'- -cUUGCAGcCGGUaGUAGUcucGCCGCCCu -3'
miRNA:   3'- uuGACGUU-GUCAaCGUCGu--UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 43818 0.67 0.969569
Target:  5'- ---cGCAGCAGccggGuCAGCcGCCGCCg -3'
miRNA:   3'- uugaCGUUGUCaa--C-GUCGuUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 44071 0.68 0.943269
Target:  5'- cGGCcgggGCAGCAGacggUGCAgGCGccGCCGCCa -3'
miRNA:   3'- -UUGa---CGUUGUCa---ACGU-CGU--UGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 44301 0.66 0.987365
Target:  5'- gAGCUGgGcgGGUUGCuGUGGCCGCUg -3'
miRNA:   3'- -UUGACgUugUCAACGuCGUUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 44341 0.67 0.976141
Target:  5'- aAGCUGCAccgcauccgcgacgcGCuGggGCuGCGGCCcacGCCCg -3'
miRNA:   3'- -UUGACGU---------------UGuCaaCGuCGUUGG---CGGG- -5'
14577 3' -53.3 NC_003521.1 + 44366 0.67 0.969569
Target:  5'- cGAgUGcCAGCGGagguucgcGCGGCAGCCGgCCg -3'
miRNA:   3'- -UUgAC-GUUGUCaa------CGUCGUUGGCgGG- -5'
14577 3' -53.3 NC_003521.1 + 44408 0.66 0.983961
Target:  5'- cGACaGCGACuGUcugUGCcGCugcCCGCCCa -3'
miRNA:   3'- -UUGaCGUUGuCA---ACGuCGuu-GGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 45206 0.66 0.985223
Target:  5'- -cCUGCGACGcaucuaCAGCAugaugaucgaaggcGCCGCCCg -3'
miRNA:   3'- uuGACGUUGUcaac--GUCGU--------------UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 46573 0.72 0.83149
Target:  5'- ---aGCggUGGUUGCGGUAGCCcuucuuGCCCa -3'
miRNA:   3'- uugaCGuuGUCAACGUCGUUGG------CGGG- -5'
14577 3' -53.3 NC_003521.1 + 47259 0.68 0.955907
Target:  5'- -uCUGCGA-GGUgGUGGCcaAACCGCCCg -3'
miRNA:   3'- uuGACGUUgUCAaCGUCG--UUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 47658 0.76 0.617282
Target:  5'- cAGCUGCGcaACAGcaGCAGCAGaCGCCCc -3'
miRNA:   3'- -UUGACGU--UGUCaaCGUCGUUgGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 49550 0.66 0.987365
Target:  5'- uGCUGCAcaACcuGUucUGCGGCuGCCGCUUc -3'
miRNA:   3'- uUGACGU--UGu-CA--ACGUCGuUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 49575 0.66 0.979902
Target:  5'- uGCcGCGugGGccGCGGCG-CCGCCUc -3'
miRNA:   3'- uUGaCGUugUCaaCGUCGUuGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 49816 0.69 0.93365
Target:  5'- uGGCUGgGcgccguGCAGUgcgccgUGCAGaCGGCCGUCCa -3'
miRNA:   3'- -UUGACgU------UGUCA------ACGUC-GUUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 50275 0.68 0.959291
Target:  5'- cGCUGCAGCcgGGUccgccgcUGCuGCcGCCGCaCCu -3'
miRNA:   3'- uUGACGUUG--UCA-------ACGuCGuUGGCG-GG- -5'
14577 3' -53.3 NC_003521.1 + 52163 0.67 0.975125
Target:  5'- ---aGCGACGGUaccGCGGgu-CCGCCCg -3'
miRNA:   3'- uugaCGUUGUCAa--CGUCguuGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.