miRNA display CGI


Results 61 - 80 of 303 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14577 3' -53.3 NC_003521.1 + 52408 0.69 0.928477
Target:  5'- uACUGcCAGCAGUacgaGUAGCAcgacGCUGUCCa -3'
miRNA:   3'- uUGAC-GUUGUCAa---CGUCGU----UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 52669 0.68 0.947718
Target:  5'- gAGCgGCAGCAGcggcaccgGCAGCGucggcggugccaGCCGCuCCa -3'
miRNA:   3'- -UUGaCGUUGUCaa------CGUCGU------------UGGCG-GG- -5'
14577 3' -53.3 NC_003521.1 + 52793 0.69 0.917402
Target:  5'- ---gGCGGCGG-UGCGGCuccaccugGACCGCCUu -3'
miRNA:   3'- uugaCGUUGUCaACGUCG--------UUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 52972 0.69 0.93365
Target:  5'- --aUGCAACAGgcGguGaggaaGGCCGUCCg -3'
miRNA:   3'- uugACGUUGUCaaCguCg----UUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 53158 0.69 0.923062
Target:  5'- ---cGUAACAGUa-CAcGCGGCCGCCCu -3'
miRNA:   3'- uugaCGUUGUCAacGU-CGUUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 53509 0.7 0.905359
Target:  5'- uGCUGCGGC-GUcGCAGCGGCCgauggugcuGUCCg -3'
miRNA:   3'- uUGACGUUGuCAaCGUCGUUGG---------CGGG- -5'
14577 3' -53.3 NC_003521.1 + 56677 0.77 0.555862
Target:  5'- ---cGCAcCAGgucGCAGUAGCCGCCCa -3'
miRNA:   3'- uugaCGUuGUCaa-CGUCGUUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 56911 0.71 0.86362
Target:  5'- ---cGCGACAGcgccGCAGC-ACCGCCUc -3'
miRNA:   3'- uugaCGUUGUCaa--CGUCGuUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 57984 0.67 0.975125
Target:  5'- cGCUGCu---GUUGuCAGCG-CCGCCg -3'
miRNA:   3'- uUGACGuuguCAAC-GUCGUuGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 58418 0.67 0.975125
Target:  5'- --aUGCGGCGGUUgacgaagccGCAGCG-CUGCCg -3'
miRNA:   3'- uugACGUUGUCAA---------CGUCGUuGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 58737 0.69 0.938098
Target:  5'- ---gGCGGCGG-UGCAGCAGCCacugcgggcugagGUCCa -3'
miRNA:   3'- uugaCGUUGUCaACGUCGUUGG-------------CGGG- -5'
14577 3' -53.3 NC_003521.1 + 59283 0.67 0.963178
Target:  5'- uACUG-AGCGGUcGCGGCGGcCCGCUa -3'
miRNA:   3'- uUGACgUUGUCAaCGUCGUU-GGCGGg -5'
14577 3' -53.3 NC_003521.1 + 59428 0.66 0.982017
Target:  5'- ---cGCGACAGcgGC-GCcGCCGCCg -3'
miRNA:   3'- uugaCGUUGUCaaCGuCGuUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 59604 0.69 0.911501
Target:  5'- gGACgguagugGCGGCGGccccgGCGGCGACCGCg- -3'
miRNA:   3'- -UUGa------CGUUGUCaa---CGUCGUUGGCGgg -5'
14577 3' -53.3 NC_003521.1 + 60011 0.66 0.983961
Target:  5'- -cCUGCAGCAGcgcGaCAGC-ACCGgCCu -3'
miRNA:   3'- uuGACGUUGUCaa-C-GUCGuUGGCgGG- -5'
14577 3' -53.3 NC_003521.1 + 60748 0.68 0.959656
Target:  5'- cGGCgGCGGCAGUcGCcGCGggagaauccccGCCGCCUc -3'
miRNA:   3'- -UUGaCGUUGUCAaCGuCGU-----------UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 60771 0.68 0.955907
Target:  5'- --gUGCGACAG-UGCGGCAuGCUGCg- -3'
miRNA:   3'- uugACGUUGUCaACGUCGU-UGGCGgg -5'
14577 3' -53.3 NC_003521.1 + 61226 0.67 0.966481
Target:  5'- ---cGCAGCAGcaGCGGCAGCCuGCa- -3'
miRNA:   3'- uugaCGUUGUCaaCGUCGUUGG-CGgg -5'
14577 3' -53.3 NC_003521.1 + 61945 0.66 0.979902
Target:  5'- aGAC-GCAACAGgcgGCcucGCucuACUGCCCg -3'
miRNA:   3'- -UUGaCGUUGUCaa-CGu--CGu--UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 63281 0.69 0.928477
Target:  5'- ---gGCGAcCGGgUGCAGCAGCUGCUg -3'
miRNA:   3'- uugaCGUU-GUCaACGUCGUUGGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.