miRNA display CGI


Results 81 - 100 of 303 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14577 3' -53.3 NC_003521.1 + 63611 0.67 0.963178
Target:  5'- cAGCUGUccGACc--UGCAGCG-CCGCCUg -3'
miRNA:   3'- -UUGACG--UUGucaACGUCGUuGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 63895 0.67 0.973543
Target:  5'- gAGCUGCAGCAGUugggcacccacaagaUGCuGgAGCUGCa- -3'
miRNA:   3'- -UUGACGUUGUCA---------------ACGuCgUUGGCGgg -5'
14577 3' -53.3 NC_003521.1 + 65604 0.72 0.822978
Target:  5'- cAGCUGCAACA---GCAGCuaaacACgGCCCg -3'
miRNA:   3'- -UUGACGUUGUcaaCGUCGu----UGgCGGG- -5'
14577 3' -53.3 NC_003521.1 + 66962 0.67 0.971605
Target:  5'- cGCUGCGGCAGgacgagcgcagccugGCAcGCAAgUGCUCg -3'
miRNA:   3'- uUGACGUUGUCaa-------------CGU-CGUUgGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 68539 0.7 0.885514
Target:  5'- -----gGACGGcgGCAGCGGCCGCCa -3'
miRNA:   3'- uugacgUUGUCaaCGUCGUUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 69720 0.67 0.966481
Target:  5'- -uCUGCuGACAG-UGCAGCuucuCCuuGCCCa -3'
miRNA:   3'- uuGACG-UUGUCaACGUCGuu--GG--CGGG- -5'
14577 3' -53.3 NC_003521.1 + 70146 0.68 0.943269
Target:  5'- gAGCUGCGGCGa--GC-GCGGCUGCCUa -3'
miRNA:   3'- -UUGACGUUGUcaaCGuCGUUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 70654 0.72 0.81429
Target:  5'- cGCUGCGGCuGgUGCuGCAGCUGCUg -3'
miRNA:   3'- uUGACGUUGuCaACGuCGUUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 70749 0.66 0.982017
Target:  5'- cAGCUGCAGCGc--GCcGCGGCCGaucaCCa -3'
miRNA:   3'- -UUGACGUUGUcaaCGuCGUUGGCg---GG- -5'
14577 3' -53.3 NC_003521.1 + 71880 0.71 0.839818
Target:  5'- cGACgGCGACAGcgGCGGCccuGCCugcGCCCu -3'
miRNA:   3'- -UUGaCGUUGUCaaCGUCGu--UGG---CGGG- -5'
14577 3' -53.3 NC_003521.1 + 73132 0.79 0.439857
Target:  5'- uGCUGCAcgGCGGggGCAGCGgcggcggcGCCGCCUc -3'
miRNA:   3'- uUGACGU--UGUCaaCGUCGU--------UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 73241 0.67 0.975125
Target:  5'- gAGCgGCAACAGcaGCGGCGugacgacgagcGCCGUCa -3'
miRNA:   3'- -UUGaCGUUGUCaaCGUCGU-----------UGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 74022 0.72 0.805433
Target:  5'- cGCaGCAGCAGcgGCGGCGGCauCGUCCg -3'
miRNA:   3'- uUGaCGUUGUCaaCGUCGUUG--GCGGG- -5'
14577 3' -53.3 NC_003521.1 + 74203 0.71 0.855889
Target:  5'- cAGCUGCuACAGggacaGCAGCAGCagGCCg -3'
miRNA:   3'- -UUGACGuUGUCaa---CGUCGUUGg-CGGg -5'
14577 3' -53.3 NC_003521.1 + 74357 0.72 0.787249
Target:  5'- uGCUGCGcggcuACGGccagUGCGGCGACgGCUCg -3'
miRNA:   3'- uUGACGU-----UGUCa---ACGUCGUUGgCGGG- -5'
14577 3' -53.3 NC_003521.1 + 74694 0.67 0.972448
Target:  5'- cAGCaGCGACGGcggcgccGCGGCAGCgGCUCc -3'
miRNA:   3'- -UUGaCGUUGUCaa-----CGUCGUUGgCGGG- -5'
14577 3' -53.3 NC_003521.1 + 74792 0.66 0.982017
Target:  5'- cGGCgGCAGCGGUaGCGGCGAgaCGCg- -3'
miRNA:   3'- -UUGaCGUUGUCAaCGUCGUUg-GCGgg -5'
14577 3' -53.3 NC_003521.1 + 74903 0.74 0.731569
Target:  5'- aGACggugGCGGCGGUggagucggcccgGCAGCGcggggugguguacccGCCGCCCg -3'
miRNA:   3'- -UUGa---CGUUGUCAa-----------CGUCGU---------------UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 75319 0.67 0.972448
Target:  5'- cGACUGCGucaccCAGaUGCuGaCGGCgGCCCg -3'
miRNA:   3'- -UUGACGUu----GUCaACGuC-GUUGgCGGG- -5'
14577 3' -53.3 NC_003521.1 + 76354 0.75 0.65855
Target:  5'- cGGCUGCGGCGGcggcaGCGGCGACCGUg- -3'
miRNA:   3'- -UUGACGUUGUCaa---CGUCGUUGGCGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.