miRNA display CGI


Results 1 - 20 of 303 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14577 3' -53.3 NC_003521.1 + 240620 0.69 0.911501
Target:  5'- ---cGCGGCGGcgUGCGGCGgGCCGgCCg -3'
miRNA:   3'- uugaCGUUGUCa-ACGUCGU-UGGCgGG- -5'
14577 3' -53.3 NC_003521.1 + 240457 0.72 0.796416
Target:  5'- aGGCggGCAGCGGUcGCAGgcGCCGCCUc -3'
miRNA:   3'- -UUGa-CGUUGUCAaCGUCguUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 239378 0.67 0.975125
Target:  5'- uGCUGCcaccGGCGGc-GCAGCucGCgGCCCa -3'
miRNA:   3'- uUGACG----UUGUCaaCGUCGu-UGgCGGG- -5'
14577 3' -53.3 NC_003521.1 + 238728 0.66 0.987365
Target:  5'- cACcgGCAGCAGUUccaGCAGCAGaaGUCg -3'
miRNA:   3'- uUGa-CGUUGUCAA---CGUCGUUggCGGg -5'
14577 3' -53.3 NC_003521.1 + 238658 0.78 0.467658
Target:  5'- uGCUGCAACuGUUGCAGUuGCUGCUg -3'
miRNA:   3'- uUGACGUUGuCAACGUCGuUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 235261 0.72 0.823838
Target:  5'- uGACaGCGACGGacggaacaacgaugGCGGCGGCCGCgCCg -3'
miRNA:   3'- -UUGaCGUUGUCaa------------CGUCGUUGGCG-GG- -5'
14577 3' -53.3 NC_003521.1 + 235212 0.66 0.98574
Target:  5'- cGACUGCGACgAGUgGCAGUcgcaccucuACCGCg- -3'
miRNA:   3'- -UUGACGUUG-UCAaCGUCGu--------UGGCGgg -5'
14577 3' -53.3 NC_003521.1 + 234391 0.66 0.987365
Target:  5'- uGCUGUu---GUcGCAGCGGCCcCCCg -3'
miRNA:   3'- uUGACGuuguCAaCGUCGUUGGcGGG- -5'
14577 3' -53.3 NC_003521.1 + 234292 0.66 0.982017
Target:  5'- -cCUGgGGCGGgacGCAG--ACCGCCCu -3'
miRNA:   3'- uuGACgUUGUCaa-CGUCguUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 232354 0.7 0.885514
Target:  5'- ---aGCAGCAGUcGCGGCGgcACCGCg- -3'
miRNA:   3'- uugaCGUUGUCAaCGUCGU--UGGCGgg -5'
14577 3' -53.3 NC_003521.1 + 230799 0.67 0.963178
Target:  5'- -cUUGaCAAUGGUcacgcUGCuGCGGCUGCCCa -3'
miRNA:   3'- uuGAC-GUUGUCA-----ACGuCGUUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 228572 0.69 0.917402
Target:  5'- gGACUGCAGCucg-GCAGCGagagugaggucuGCCGUCg -3'
miRNA:   3'- -UUGACGUUGucaaCGUCGU------------UGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 227641 0.69 0.93858
Target:  5'- ---gGCGuGCAGUgaCAGCGGCCGUCCg -3'
miRNA:   3'- uugaCGU-UGUCAacGUCGUUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 225749 0.72 0.822978
Target:  5'- cACUcGUAguGCuGUUGCAGCAcgcGCCGCUCg -3'
miRNA:   3'- uUGA-CGU--UGuCAACGUCGU---UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 224914 0.69 0.925257
Target:  5'- -cCUGCGagggcucguagauguACAGgcGCGuGCuGCCGCCCa -3'
miRNA:   3'- uuGACGU---------------UGUCaaCGU-CGuUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 224763 0.76 0.576192
Target:  5'- gGGCUcCGGCAGUugUGCAGCAG-CGCCCg -3'
miRNA:   3'- -UUGAcGUUGUCA--ACGUCGUUgGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 223850 0.69 0.911501
Target:  5'- -cCUGCGGCuGcUGCuGCGGCUGUCCc -3'
miRNA:   3'- uuGACGUUGuCaACGuCGUUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 223844 0.75 0.65855
Target:  5'- uACUGCAGCAGaaacUGCAGCucuucguGCUGCCa -3'
miRNA:   3'- uUGACGUUGUCa---ACGUCGu------UGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 212228 0.69 0.917402
Target:  5'- gGAUgGUGGCGGUgcGCAGCAgcccGCCGUCCg -3'
miRNA:   3'- -UUGaCGUUGUCAa-CGUCGU----UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 209090 0.67 0.975125
Target:  5'- ---gGCGGCGGagGCGGUGGCCGCg- -3'
miRNA:   3'- uugaCGUUGUCaaCGUCGUUGGCGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.