miRNA display CGI


Results 21 - 40 of 303 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14577 3' -53.3 NC_003521.1 + 208210 0.72 0.796416
Target:  5'- gAACUGCAGCAGUcGCAGguACagacaccagaGCCa -3'
miRNA:   3'- -UUGACGUUGUCAaCGUCguUGg---------CGGg -5'
14577 3' -53.3 NC_003521.1 + 203717 0.67 0.972448
Target:  5'- ---aGCGACGGcaGCAGCAGCCGg-- -3'
miRNA:   3'- uugaCGUUGUCaaCGUCGUUGGCggg -5'
14577 3' -53.3 NC_003521.1 + 202398 1.11 0.005181
Target:  5'- cAACUGCAACAGUUGCAGCAACCGCCCg -3'
miRNA:   3'- -UUGACGUUGUCAACGUCGUUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 201811 0.66 0.979902
Target:  5'- cGCUGCuGACGGccgUGCAGCGccacauccaccAgCGCCUg -3'
miRNA:   3'- uUGACG-UUGUCa--ACGUCGU-----------UgGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 200299 0.69 0.911501
Target:  5'- ---cGCGGCGGcgUGCGGCGgGCCGgCCg -3'
miRNA:   3'- uugaCGUUGUCa-ACGUCGU-UGGCgGG- -5'
14577 3' -53.3 NC_003521.1 + 199641 0.7 0.878437
Target:  5'- uAAUUGCAGCAGgcagaGCAGCAGCagaGUCg -3'
miRNA:   3'- -UUGACGUUGUCaa---CGUCGUUGg--CGGg -5'
14577 3' -53.3 NC_003521.1 + 198840 0.7 0.904732
Target:  5'- uGCUGCGACcuuaagaAGgcGCGGCGgucgaacaGCUGCCCc -3'
miRNA:   3'- uUGACGUUG-------UCaaCGUCGU--------UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 198797 0.66 0.979902
Target:  5'- cAGCUGCGugGugccgGCGGCGucugucguGCCGCCg -3'
miRNA:   3'- -UUGACGUugUcaa--CGUCGU--------UGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 198045 0.71 0.838994
Target:  5'- gGGCUGCAcggGCAGgugcuugaGCAGCAGCUuuuucuuGCCCu -3'
miRNA:   3'- -UUGACGU---UGUCaa------CGUCGUUGG-------CGGG- -5'
14577 3' -53.3 NC_003521.1 + 197181 0.68 0.959656
Target:  5'- -uCUGCucucCGGcgGCGGCcGCCGCCUc -3'
miRNA:   3'- uuGACGuu--GUCaaCGUCGuUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 196986 0.69 0.921949
Target:  5'- -cCUGUGACGGgcccgcggccgGCGGCGGCUGaCCCg -3'
miRNA:   3'- uuGACGUUGUCaa---------CGUCGUUGGC-GGG- -5'
14577 3' -53.3 NC_003521.1 + 196939 0.67 0.972448
Target:  5'- cGGCaGCAcCGGUaGCgugGGCGACgGCCCg -3'
miRNA:   3'- -UUGaCGUuGUCAaCG---UCGUUGgCGGG- -5'
14577 3' -53.3 NC_003521.1 + 196860 0.72 0.787249
Target:  5'- -uCUGCGucaGCAuGUcgaGCAGCAGCCGCCg -3'
miRNA:   3'- uuGACGU---UGU-CAa--CGUCGUUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 196726 0.73 0.743392
Target:  5'- cGGCgGCGACGGUggugGCGGCGgcgccugcaccgucuGCUGCCCc -3'
miRNA:   3'- -UUGaCGUUGUCAa---CGUCGU---------------UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 196519 0.72 0.822978
Target:  5'- ---cGCAGCGGccaCAGCAAcCCGCCCa -3'
miRNA:   3'- uugaCGUUGUCaacGUCGUU-GGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 193381 0.66 0.979902
Target:  5'- gGAgUGCGGCGcccgGCuGCAugUGCCCu -3'
miRNA:   3'- -UUgACGUUGUcaa-CGuCGUugGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 193169 0.74 0.69947
Target:  5'- uGCUGCuGCuGUUGC-GCAGCUGCCg -3'
miRNA:   3'- uUGACGuUGuCAACGuCGUUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 191692 0.73 0.739466
Target:  5'- ---cGCAACAGUccccGCAGCAGCgGCgCCg -3'
miRNA:   3'- uugaCGUUGUCAa---CGUCGUUGgCG-GG- -5'
14577 3' -53.3 NC_003521.1 + 191144 0.66 0.979902
Target:  5'- uGACgGCGACAGc-GCcGCGcUCGCCCg -3'
miRNA:   3'- -UUGaCGUUGUCaaCGuCGUuGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 190536 0.72 0.81429
Target:  5'- gAGgUGCGGCGGcaGCAGCGGCgGaCCCg -3'
miRNA:   3'- -UUgACGUUGUCaaCGUCGUUGgC-GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.