miRNA display CGI


Results 41 - 60 of 303 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14577 3' -53.3 NC_003521.1 + 188241 0.67 0.966481
Target:  5'- cGCaGCAGCGGUUG-AGCcAGCCGCaCUu -3'
miRNA:   3'- uUGaCGUUGUCAACgUCG-UUGGCG-GG- -5'
14577 3' -53.3 NC_003521.1 + 187322 0.76 0.596684
Target:  5'- cGCUGCGACGcc-GCAGCAGCgGCCUc -3'
miRNA:   3'- uUGACGUUGUcaaCGUCGUUGgCGGG- -5'
14577 3' -53.3 NC_003521.1 + 187158 0.67 0.976141
Target:  5'- cGGCgGCGGCAGgagcggaagcaacgUGCGGaGACgGCCCg -3'
miRNA:   3'- -UUGaCGUUGUCa-------------ACGUCgUUGgCGGG- -5'
14577 3' -53.3 NC_003521.1 + 186858 0.68 0.951929
Target:  5'- ---aGCGGCGGcgUGCAGCAcgGCUcgucgGCCCa -3'
miRNA:   3'- uugaCGUUGUCa-ACGUCGU--UGG-----CGGG- -5'
14577 3' -53.3 NC_003521.1 + 186575 0.74 0.71962
Target:  5'- -cCUGCuugucucCAGaacgGUAGCAGCCGCCCg -3'
miRNA:   3'- uuGACGuu-----GUCaa--CGUCGUUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 185353 0.66 0.981814
Target:  5'- gGACgGCAaggcggcGCAGUgccucuucCAGCGcGCCGCCCa -3'
miRNA:   3'- -UUGaCGU-------UGUCAac------GUCGU-UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 184877 0.66 0.987365
Target:  5'- gGGCUGCAcACGG-UGCu-CAugCGCCUg -3'
miRNA:   3'- -UUGACGU-UGUCaACGucGUugGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 184661 0.67 0.972448
Target:  5'- cGCUGCGuguucgcgcGCAGcgaGCAGCAcgagccgcACuCGCCCg -3'
miRNA:   3'- uUGACGU---------UGUCaa-CGUCGU--------UG-GCGGG- -5'
14577 3' -53.3 NC_003521.1 + 183107 0.68 0.953548
Target:  5'- -uCUGCGACucguugcucucacccGGUUGCGGCggUCGCa- -3'
miRNA:   3'- uuGACGUUG---------------UCAACGUCGuuGGCGgg -5'
14577 3' -53.3 NC_003521.1 + 182072 0.66 0.982017
Target:  5'- uGGCUGgAccucagcccGCAGUggcUGCuGCAccGCCGCCUg -3'
miRNA:   3'- -UUGACgU---------UGUCA---ACGuCGU--UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 181525 0.66 0.979902
Target:  5'- gGugUGCGcgaagacuaGCGGgccGCcGCGACCGCUCa -3'
miRNA:   3'- -UugACGU---------UGUCaa-CGuCGUUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 181288 0.69 0.93858
Target:  5'- cAGCUGCAGcCGGgaaGagaAGCucagGCCGCCCg -3'
miRNA:   3'- -UUGACGUU-GUCaa-Cg--UCGu---UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 180533 0.74 0.69947
Target:  5'- cGCUGCAGguGUUGUAGUugaAGCCuaGCCCc -3'
miRNA:   3'- uUGACGUUguCAACGUCG---UUGG--CGGG- -5'
14577 3' -53.3 NC_003521.1 + 180109 0.71 0.86362
Target:  5'- ---gGCAGCGGcgUGguGCGacccgcGCCGCCCc -3'
miRNA:   3'- uugaCGUUGUCa-ACguCGU------UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 180064 0.67 0.966481
Target:  5'- ---gGCGGCGGggauucucccGCGGCGACUGCCg -3'
miRNA:   3'- uugaCGUUGUCaa--------CGUCGUUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 177464 0.67 0.966481
Target:  5'- aAGCUGCuGACGGUcUGC-GCGGCCGUg- -3'
miRNA:   3'- -UUGACG-UUGUCA-ACGuCGUUGGCGgg -5'
14577 3' -53.3 NC_003521.1 + 176938 0.67 0.963178
Target:  5'- cAACUGCuGCAGcuccCGGCGcGCCGCCUc -3'
miRNA:   3'- -UUGACGuUGUCaac-GUCGU-UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 175227 0.71 0.871137
Target:  5'- uAGCUGCu---GUUGCAGCuguuGCUGUCCc -3'
miRNA:   3'- -UUGACGuuguCAACGUCGu---UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 173538 0.7 0.878437
Target:  5'- ---gGCGuCAGgcGCAGCGGCUGUCCu -3'
miRNA:   3'- uugaCGUuGUCaaCGUCGUUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 172772 0.68 0.955907
Target:  5'- uGGCUGCcacCGGggGCGccGCGgaccacGCCGCCCg -3'
miRNA:   3'- -UUGACGuu-GUCaaCGU--CGU------UGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.