miRNA display CGI


Results 61 - 80 of 303 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14577 3' -53.3 NC_003521.1 + 172276 0.73 0.739466
Target:  5'- uGCUGCuGAUAGUUgGCGGCcgcuGCCGCCg -3'
miRNA:   3'- uUGACG-UUGUCAA-CGUCGu---UGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 171497 0.66 0.983961
Target:  5'- uACcGCGACAGcUGUuuggaaAGCGaggacggcGCCGCCCu -3'
miRNA:   3'- uUGaCGUUGUCaACG------UCGU--------UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 170964 0.67 0.975125
Target:  5'- cGCUGCGcgGCGGccucaucgGCAGCGucaucgaccuGCCGCUCu -3'
miRNA:   3'- uUGACGU--UGUCaa------CGUCGU----------UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 170167 0.72 0.787249
Target:  5'- ---aGCAGCAGcUGCAGCAccaGCCGCa- -3'
miRNA:   3'- uugaCGUUGUCaACGUCGU---UGGCGgg -5'
14577 3' -53.3 NC_003521.1 + 168565 0.66 0.982017
Target:  5'- gGGCUGCG--GGUaagGUGGCGGCUGaCCCa -3'
miRNA:   3'- -UUGACGUugUCAa--CGUCGUUGGC-GGG- -5'
14577 3' -53.3 NC_003521.1 + 167675 0.7 0.898978
Target:  5'- uGACgUGCucGCGGUUGCGGUGACgaCGCUCg -3'
miRNA:   3'- -UUG-ACGu-UGUCAACGUCGUUG--GCGGG- -5'
14577 3' -53.3 NC_003521.1 + 166544 0.66 0.981192
Target:  5'- cAGCUGCGACGGaUUguuguacagcaugaGCAGCGACuccaggaacccguCGUCCa -3'
miRNA:   3'- -UUGACGUUGUC-AA--------------CGUCGUUG-------------GCGGG- -5'
14577 3' -53.3 NC_003521.1 + 165626 0.66 0.987365
Target:  5'- --gUGCAccacggugaacACGGUguugaGCAGCAGCaCGCCg -3'
miRNA:   3'- uugACGU-----------UGUCAa----CGUCGUUG-GCGGg -5'
14577 3' -53.3 NC_003521.1 + 165181 0.71 0.869651
Target:  5'- gGACUGCGccGCuGUUGCcgucgucaucgucGGCGacugagccguggcGCCGCCCg -3'
miRNA:   3'- -UUGACGU--UGuCAACG-------------UCGU-------------UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 164542 0.73 0.768497
Target:  5'- gGACUcGCAGCAGcgGCAGCGACucuuccucuCGCCa -3'
miRNA:   3'- -UUGA-CGUUGUCaaCGUCGUUG---------GCGGg -5'
14577 3' -53.3 NC_003521.1 + 164209 0.69 0.911501
Target:  5'- cGGCgggGCGGCGGUgGUAGCGGCgGCUg -3'
miRNA:   3'- -UUGa--CGUUGUCAaCGUCGUUGgCGGg -5'
14577 3' -53.3 NC_003521.1 + 163773 0.68 0.951929
Target:  5'- cGGCgGCAacaACGGUaGCGGCGccaccACCGCCg -3'
miRNA:   3'- -UUGaCGU---UGUCAaCGUCGU-----UGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 163350 0.69 0.93365
Target:  5'- -gUUGUAGCGGUaGCAGCGGCgGCg- -3'
miRNA:   3'- uuGACGUUGUCAaCGUCGUUGgCGgg -5'
14577 3' -53.3 NC_003521.1 + 163204 0.69 0.93858
Target:  5'- uGGCgGCGGCAGcgGCAGUAGCUccggcgGCCUg -3'
miRNA:   3'- -UUGaCGUUGUCaaCGUCGUUGG------CGGG- -5'
14577 3' -53.3 NC_003521.1 + 162346 0.66 0.987365
Target:  5'- cGACUGCGGgcGUggGCGcGCAGCCcCCCg -3'
miRNA:   3'- -UUGACGUUguCAa-CGU-CGUUGGcGGG- -5'
14577 3' -53.3 NC_003521.1 + 161277 0.7 0.892362
Target:  5'- cGGCgGCAACAGUaGCAGCAGCgagggaGCUUg -3'
miRNA:   3'- -UUGaCGUUGUCAaCGUCGUUGg-----CGGG- -5'
14577 3' -53.3 NC_003521.1 + 161235 0.74 0.709579
Target:  5'- uGGCgGCGGCAGcgGCAGUAGCgGCCa -3'
miRNA:   3'- -UUGaCGUUGUCaaCGUCGUUGgCGGg -5'
14577 3' -53.3 NC_003521.1 + 161171 0.69 0.911501
Target:  5'- ---cGCAACAGUcgccgcUGCAGCAGCagacgaCGCCg -3'
miRNA:   3'- uugaCGUUGUCA------ACGUCGUUG------GCGGg -5'
14577 3' -53.3 NC_003521.1 + 160795 0.73 0.758931
Target:  5'- cAGCaGCAacaagaaacaGCAGccGCAGCAgaaGCCGCCCa -3'
miRNA:   3'- -UUGaCGU----------UGUCaaCGUCGU---UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 160506 0.67 0.963178
Target:  5'- aGACcGCGGCGGgaggaggggGCGGCAGCCuCCUc -3'
miRNA:   3'- -UUGaCGUUGUCaa-------CGUCGUUGGcGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.