miRNA display CGI


Results 1 - 20 of 303 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14577 3' -53.3 NC_003521.1 + 154044 0.73 0.769447
Target:  5'- uGCcGCGGCAGgcgcccauaaagccgUGCAGCAGCCGCa- -3'
miRNA:   3'- uUGaCGUUGUCa--------------ACGUCGUUGGCGgg -5'
14577 3' -53.3 NC_003521.1 + 186575 0.74 0.71962
Target:  5'- -cCUGCuugucucCAGaacgGUAGCAGCCGCCCg -3'
miRNA:   3'- uuGACGuu-----GUCaa--CGUCGUUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 148802 0.74 0.71962
Target:  5'- cGGCUGCGGacGUUcaucgugcGCGGCGACCGCCUg -3'
miRNA:   3'- -UUGACGUUguCAA--------CGUCGUUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 5525 0.74 0.729586
Target:  5'- cAGCaGCGACGGUgacgGCAGCcggcgcGGCCGCCg -3'
miRNA:   3'- -UUGaCGUUGUCAa---CGUCG------UUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 145579 0.73 0.739466
Target:  5'- uGCUGCGGCGGcacgacGCGGCGGCCGUggCCu -3'
miRNA:   3'- uUGACGUUGUCaa----CGUCGUUGGCG--GG- -5'
14577 3' -53.3 NC_003521.1 + 196726 0.73 0.743392
Target:  5'- cGGCgGCGACGGUggugGCGGCGgcgccugcaccgucuGCUGCCCc -3'
miRNA:   3'- -UUGaCGUUGUCAa---CGUCGU---------------UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 18773 0.73 0.749251
Target:  5'- uGCUGCGACGGcUGguGCcccCCGCCg -3'
miRNA:   3'- uUGACGUUGUCaACguCGuu-GGCGGg -5'
14577 3' -53.3 NC_003521.1 + 143547 0.73 0.749251
Target:  5'- cGCcgGCGACGa--GCAGCAGCCGCCa -3'
miRNA:   3'- uUGa-CGUUGUcaaCGUCGUUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 164542 0.73 0.768497
Target:  5'- gGACUcGCAGCAGcgGCAGCGACucuuccucuCGCCa -3'
miRNA:   3'- -UUGA-CGUUGUCaaCGUCGUUG---------GCGGg -5'
14577 3' -53.3 NC_003521.1 + 193169 0.74 0.69947
Target:  5'- uGCUGCuGCuGUUGC-GCAGCUGCCg -3'
miRNA:   3'- uUGACGuUGuCAACGuCGUUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 87611 0.74 0.689303
Target:  5'- -gUUGUAGCAGgugugGCAGCAgguGCCGCCg -3'
miRNA:   3'- uuGACGUUGUCaa---CGUCGU---UGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 116082 0.75 0.679089
Target:  5'- ---cGCAGCGagUGCAGCGGCUGUCCg -3'
miRNA:   3'- uugaCGUUGUcaACGUCGUUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 79656 0.81 0.354512
Target:  5'- uGCUGCAGCGgcgacuGUUGCGaacgacguccGCGACCGCCCg -3'
miRNA:   3'- uUGACGUUGU------CAACGU----------CGUUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 41946 0.8 0.387221
Target:  5'- cGGCUGCGACAGUgcauccggggGCAGCuguucGACCGCCg -3'
miRNA:   3'- -UUGACGUUGUCAa---------CGUCG-----UUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 73132 0.79 0.439857
Target:  5'- uGCUGCAcgGCGGggGCAGCGgcggcggcGCCGCCUc -3'
miRNA:   3'- uUGACGU--UGUCaaCGUCGU--------UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 238658 0.78 0.467658
Target:  5'- uGCUGCAACuGUUGCAGUuGCUGCUg -3'
miRNA:   3'- uUGACGUUGuCAACGUCGuUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 56677 0.77 0.555862
Target:  5'- ---cGCAcCAGgucGCAGUAGCCGCCCa -3'
miRNA:   3'- uugaCGUuGUCaa-CGUCGUUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 224763 0.76 0.576192
Target:  5'- gGGCUcCGGCAGUugUGCAGCAG-CGCCCg -3'
miRNA:   3'- -UUGAcGUUGUCA--ACGUCGUUgGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 155602 0.76 0.586421
Target:  5'- gAGCaGCAGCAGgagGUGGCGACCGCUg -3'
miRNA:   3'- -UUGaCGUUGUCaa-CGUCGUUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 149833 0.75 0.627602
Target:  5'- cAGCUGCAACA---GCAGCAucggcguucGCCGCCUc -3'
miRNA:   3'- -UUGACGUUGUcaaCGUCGU---------UGGCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.