miRNA display CGI


Results 41 - 60 of 303 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14577 3' -53.3 NC_003521.1 + 56677 0.77 0.555862
Target:  5'- ---cGCAcCAGgucGCAGUAGCCGCCCa -3'
miRNA:   3'- uugaCGUuGUCaa-CGUCGUUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 238658 0.78 0.467658
Target:  5'- uGCUGCAACuGUUGCAGUuGCUGCUg -3'
miRNA:   3'- uUGACGUUGuCAACGUCGuUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 73132 0.79 0.439857
Target:  5'- uGCUGCAcgGCGGggGCAGCGgcggcggcGCCGCCUc -3'
miRNA:   3'- uUGACGU--UGUCaaCGUCGU--------UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 41946 0.8 0.387221
Target:  5'- cGGCUGCGACAGUgcauccggggGCAGCuguucGACCGCCg -3'
miRNA:   3'- -UUGACGUUGUCAa---------CGUCG-----UUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 79656 0.81 0.354512
Target:  5'- uGCUGCAGCGgcgacuGUUGCGaacgacguccGCGACCGCCCg -3'
miRNA:   3'- uUGACGUUGU------CAACGU----------CGUUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 5525 0.74 0.729586
Target:  5'- cAGCaGCGACGGUgacgGCAGCcggcgcGGCCGCCg -3'
miRNA:   3'- -UUGaCGUUGUCAa---CGUCG------UUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 145579 0.73 0.739466
Target:  5'- uGCUGCGGCGGcacgacGCGGCGGCCGUggCCu -3'
miRNA:   3'- uUGACGUUGUCaa----CGUCGUUGGCG--GG- -5'
14577 3' -53.3 NC_003521.1 + 65604 0.72 0.822978
Target:  5'- cAGCUGCAACA---GCAGCuaaacACgGCCCg -3'
miRNA:   3'- -UUGACGUUGUcaaCGUCGu----UGgCGGG- -5'
14577 3' -53.3 NC_003521.1 + 225749 0.72 0.822978
Target:  5'- cACUcGUAguGCuGUUGCAGCAcgcGCCGCUCg -3'
miRNA:   3'- uUGA-CGU--UGuCAACGUCGU---UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 70654 0.72 0.81429
Target:  5'- cGCUGCGGCuGgUGCuGCAGCUGCUg -3'
miRNA:   3'- uUGACGUUGuCaACGuCGUUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 137164 0.72 0.81429
Target:  5'- ---gGCcGCGGccGCAGCGGCCGCCg -3'
miRNA:   3'- uugaCGuUGUCaaCGUCGUUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 240457 0.72 0.796416
Target:  5'- aGGCggGCAGCGGUcGCAGgcGCCGCCUc -3'
miRNA:   3'- -UUGa-CGUUGUCAaCGUCguUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 28854 0.72 0.795506
Target:  5'- gAGCUGCGGCGGc-GCGGCAcggucgaGUCGCCCa -3'
miRNA:   3'- -UUGACGUUGUCaaCGUCGU-------UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 102771 0.72 0.786324
Target:  5'- gAGCgGCAGCGGcUGCgcgaugacgcgccGGCGGCCGCCa -3'
miRNA:   3'- -UUGaCGUUGUCaACG-------------UCGUUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 118283 0.73 0.777939
Target:  5'- ---aGCGGCGGUaGCAGCAgcacuaccACCGCCg -3'
miRNA:   3'- uugaCGUUGUCAaCGUCGU--------UGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 154044 0.73 0.769447
Target:  5'- uGCcGCGGCAGgcgcccauaaagccgUGCAGCAGCCGCa- -3'
miRNA:   3'- uUGaCGUUGUCa--------------ACGUCGUUGGCGgg -5'
14577 3' -53.3 NC_003521.1 + 164542 0.73 0.768497
Target:  5'- gGACUcGCAGCAGcgGCAGCGACucuuccucuCGCCa -3'
miRNA:   3'- -UUGA-CGUUGUCaaCGUCGUUG---------GCGGg -5'
14577 3' -53.3 NC_003521.1 + 143547 0.73 0.749251
Target:  5'- cGCcgGCGACGa--GCAGCAGCCGCCa -3'
miRNA:   3'- uUGa-CGUUGUcaaCGUCGUUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 18773 0.73 0.749251
Target:  5'- uGCUGCGACGGcUGguGCcccCCGCCg -3'
miRNA:   3'- uUGACGUUGUCaACguCGuu-GGCGGg -5'
14577 3' -53.3 NC_003521.1 + 196726 0.73 0.743392
Target:  5'- cGGCgGCGACGGUggugGCGGCGgcgccugcaccgucuGCUGCCCc -3'
miRNA:   3'- -UUGaCGUUGUCAa---CGUCGU---------------UGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.