miRNA display CGI


Results 61 - 80 of 303 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14577 3' -53.3 NC_003521.1 + 164542 0.73 0.768497
Target:  5'- gGACUcGCAGCAGcgGCAGCGACucuuccucuCGCCa -3'
miRNA:   3'- -UUGA-CGUUGUCaaCGUCGUUG---------GCGGg -5'
14577 3' -53.3 NC_003521.1 + 154044 0.73 0.769447
Target:  5'- uGCcGCGGCAGgcgcccauaaagccgUGCAGCAGCCGCa- -3'
miRNA:   3'- uUGaCGUUGUCa--------------ACGUCGUUGGCGgg -5'
14577 3' -53.3 NC_003521.1 + 46573 0.72 0.83149
Target:  5'- ---aGCggUGGUUGCGGUAGCCcuucuuGCCCa -3'
miRNA:   3'- uugaCGuuGUCAACGUCGUUGG------CGGG- -5'
14577 3' -53.3 NC_003521.1 + 116870 0.71 0.86362
Target:  5'- -cCUGCGcgcGCAGUggcgcggcUGCGGCGGCgCGCCg -3'
miRNA:   3'- uuGACGU---UGUCA--------ACGUCGUUG-GCGGg -5'
14577 3' -53.3 NC_003521.1 + 133063 0.71 0.86362
Target:  5'- cAGCaGCAGCAGUcacaGCcaucGCAGCCGCCa -3'
miRNA:   3'- -UUGaCGUUGUCAa---CGu---CGUUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 56911 0.71 0.86362
Target:  5'- ---cGCGACAGcgccGCAGC-ACCGCCUc -3'
miRNA:   3'- uugaCGUUGUCaa--CGUCGuUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 141984 0.71 0.871137
Target:  5'- gAGCUGCAGCGGgaGCuggcccgcgccaAGCAGCUGCa- -3'
miRNA:   3'- -UUGACGUUGUCaaCG------------UCGUUGGCGgg -5'
14577 3' -53.3 NC_003521.1 + 199641 0.7 0.878437
Target:  5'- uAAUUGCAGCAGgcagaGCAGCAGCagaGUCg -3'
miRNA:   3'- -UUGACGUUGUCaa---CGUCGUUGg--CGGg -5'
14577 3' -53.3 NC_003521.1 + 68539 0.7 0.885514
Target:  5'- -----gGACGGcgGCAGCGGCCGCCa -3'
miRNA:   3'- uugacgUUGUCaaCGUCGUUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 232354 0.7 0.885514
Target:  5'- ---aGCAGCAGUcGCGGCGgcACCGCg- -3'
miRNA:   3'- uugaCGUUGUCAaCGUCGU--UGGCGgg -5'
14577 3' -53.3 NC_003521.1 + 30241 0.72 0.830647
Target:  5'- cGCUGCAgguccgcGCGGUUGCcguggcGCAGCUGaCCCu -3'
miRNA:   3'- uUGACGU-------UGUCAACGu-----CGUUGGC-GGG- -5'
14577 3' -53.3 NC_003521.1 + 196519 0.72 0.822978
Target:  5'- ---cGCAGCGGccaCAGCAAcCCGCCCa -3'
miRNA:   3'- uugaCGUUGUCaacGUCGUU-GGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 118283 0.73 0.777939
Target:  5'- ---aGCGGCGGUaGCAGCAgcacuaccACCGCCg -3'
miRNA:   3'- uugaCGUUGUCAaCGUCGU--------UGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 102771 0.72 0.786324
Target:  5'- gAGCgGCAGCGGcUGCgcgaugacgcgccGGCGGCCGCCa -3'
miRNA:   3'- -UUGaCGUUGUCaACG-------------UCGUUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 28854 0.72 0.795506
Target:  5'- gAGCUGCGGCGGc-GCGGCAcggucgaGUCGCCCa -3'
miRNA:   3'- -UUGACGUUGUCaaCGUCGU-------UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 240457 0.72 0.796416
Target:  5'- aGGCggGCAGCGGUcGCAGgcGCCGCCUc -3'
miRNA:   3'- -UUGa-CGUUGUCAaCGUCguUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 137164 0.72 0.81429
Target:  5'- ---gGCcGCGGccGCAGCGGCCGCCg -3'
miRNA:   3'- uugaCGuUGUCaaCGUCGUUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 70654 0.72 0.81429
Target:  5'- cGCUGCGGCuGgUGCuGCAGCUGCUg -3'
miRNA:   3'- uUGACGUUGuCaACGuCGUUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 225749 0.72 0.822978
Target:  5'- cACUcGUAguGCuGUUGCAGCAcgcGCCGCUCg -3'
miRNA:   3'- uUGA-CGU--UGuCAACGUCGU---UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 65604 0.72 0.822978
Target:  5'- cAGCUGCAACA---GCAGCuaaacACgGCCCg -3'
miRNA:   3'- -UUGACGUUGUcaaCGUCGu----UGgCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.