Results 81 - 100 of 303 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14577 | 3' | -53.3 | NC_003521.1 | + | 116827 | 0.7 | 0.898978 |
Target: 5'- uGCUGCAGCGGUUucCAGaccugaCGGCCGCCg -3' miRNA: 3'- uUGACGUUGUCAAc-GUC------GUUGGCGGg -5' |
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14577 | 3' | -53.3 | NC_003521.1 | + | 123921 | 0.7 | 0.898978 |
Target: 5'- cGCUGUucuccacCAGUUGCAGCGG-CGCCg -3' miRNA: 3'- uUGACGuu-----GUCAACGUCGUUgGCGGg -5' |
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14577 | 3' | -53.3 | NC_003521.1 | + | 167675 | 0.7 | 0.898978 |
Target: 5'- uGACgUGCucGCGGUUGCGGUGACgaCGCUCg -3' miRNA: 3'- -UUG-ACGu-UGUCAACGUCGUUG--GCGGG- -5' |
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14577 | 3' | -53.3 | NC_003521.1 | + | 6078 | 0.7 | 0.898978 |
Target: 5'- --aUGCGACGGccggUGCGGCGGcguuCCGCCa -3' miRNA: 3'- uugACGUUGUCa---ACGUCGUU----GGCGGg -5' |
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14577 | 3' | -53.3 | NC_003521.1 | + | 43424 | 0.7 | 0.905359 |
Target: 5'- uACUGCGugcccgACgAGgagGCGGCGGCgGCCCu -3' miRNA: 3'- uUGACGU------UG-UCaa-CGUCGUUGgCGGG- -5' |
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14577 | 3' | -53.3 | NC_003521.1 | + | 17481 | 0.7 | 0.905359 |
Target: 5'- cGACgGCAcCGGUaGCGGCG-CCGCCg -3' miRNA: 3'- -UUGaCGUuGUCAaCGUCGUuGGCGGg -5' |
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14577 | 3' | -53.3 | NC_003521.1 | + | 53509 | 0.7 | 0.905359 |
Target: 5'- uGCUGCGGC-GUcGCAGCGGCCgauggugcuGUCCg -3' miRNA: 3'- uUGACGUUGuCAaCGUCGUUGG---------CGGG- -5' |
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14577 | 3' | -53.3 | NC_003521.1 | + | 232354 | 0.7 | 0.885514 |
Target: 5'- ---aGCAGCAGUcGCGGCGgcACCGCg- -3' miRNA: 3'- uugaCGUUGUCAaCGUCGU--UGGCGgg -5' |
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14577 | 3' | -53.3 | NC_003521.1 | + | 68539 | 0.7 | 0.885514 |
Target: 5'- -----gGACGGcgGCAGCGGCCGCCa -3' miRNA: 3'- uugacgUUGUCaaCGUCGUUGGCGGg -5' |
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14577 | 3' | -53.3 | NC_003521.1 | + | 199641 | 0.7 | 0.878437 |
Target: 5'- uAAUUGCAGCAGgcagaGCAGCAGCagaGUCg -3' miRNA: 3'- -UUGACGUUGUCaa---CGUCGUUGg--CGGg -5' |
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14577 | 3' | -53.3 | NC_003521.1 | + | 225749 | 0.72 | 0.822978 |
Target: 5'- cACUcGUAguGCuGUUGCAGCAcgcGCCGCUCg -3' miRNA: 3'- uUGA-CGU--UGuCAACGUCGU---UGGCGGG- -5' |
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14577 | 3' | -53.3 | NC_003521.1 | + | 65604 | 0.72 | 0.822978 |
Target: 5'- cAGCUGCAACA---GCAGCuaaacACgGCCCg -3' miRNA: 3'- -UUGACGUUGUcaaCGUCGu----UGgCGGG- -5' |
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14577 | 3' | -53.3 | NC_003521.1 | + | 196519 | 0.72 | 0.822978 |
Target: 5'- ---cGCAGCGGccaCAGCAAcCCGCCCa -3' miRNA: 3'- uugaCGUUGUCaacGUCGUU-GGCGGG- -5' |
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14577 | 3' | -53.3 | NC_003521.1 | + | 30241 | 0.72 | 0.830647 |
Target: 5'- cGCUGCAgguccgcGCGGUUGCcguggcGCAGCUGaCCCu -3' miRNA: 3'- uUGACGU-------UGUCAACGu-----CGUUGGC-GGG- -5' |
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14577 | 3' | -53.3 | NC_003521.1 | + | 46573 | 0.72 | 0.83149 |
Target: 5'- ---aGCggUGGUUGCGGUAGCCcuucuuGCCCa -3' miRNA: 3'- uugaCGuuGUCAACGUCGUUGG------CGGG- -5' |
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14577 | 3' | -53.3 | NC_003521.1 | + | 116870 | 0.71 | 0.86362 |
Target: 5'- -cCUGCGcgcGCAGUggcgcggcUGCGGCGGCgCGCCg -3' miRNA: 3'- uuGACGU---UGUCA--------ACGUCGUUG-GCGGg -5' |
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14577 | 3' | -53.3 | NC_003521.1 | + | 133063 | 0.71 | 0.86362 |
Target: 5'- cAGCaGCAGCAGUcacaGCcaucGCAGCCGCCa -3' miRNA: 3'- -UUGaCGUUGUCAa---CGu---CGUUGGCGGg -5' |
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14577 | 3' | -53.3 | NC_003521.1 | + | 56911 | 0.71 | 0.86362 |
Target: 5'- ---cGCGACAGcgccGCAGC-ACCGCCUc -3' miRNA: 3'- uugaCGUUGUCaa--CGUCGuUGGCGGG- -5' |
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14577 | 3' | -53.3 | NC_003521.1 | + | 141984 | 0.71 | 0.871137 |
Target: 5'- gAGCUGCAGCGGgaGCuggcccgcgccaAGCAGCUGCa- -3' miRNA: 3'- -UUGACGUUGUCaaCG------------UCGUUGGCGgg -5' |
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14577 | 3' | -53.3 | NC_003521.1 | + | 145897 | 0.7 | 0.905359 |
Target: 5'- cGCcgGCGGCGGgaGCAGCGGCgGUUCg -3' miRNA: 3'- uUGa-CGUUGUCaaCGUCGUUGgCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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