miRNA display CGI


Results 1 - 20 of 303 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14577 3' -53.3 NC_003521.1 + 2170 1.11 0.005181
Target:  5'- cAACUGCAACAGUUGCAGCAACCGCCCg -3'
miRNA:   3'- -UUGACGUUGUCAACGUCGUUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 135739 0.73 0.749251
Target:  5'- cGCUGCuacuGCGGUggugGCGGCGgugggAUCGCCCc -3'
miRNA:   3'- uUGACGu---UGUCAa---CGUCGU-----UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 160795 0.73 0.758931
Target:  5'- cAGCaGCAacaagaaacaGCAGccGCAGCAgaaGCCGCCCa -3'
miRNA:   3'- -UUGaCGU----------UGUCaaCGUCGU---UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 162346 0.66 0.987365
Target:  5'- cGACUGCGGgcGUggGCGcGCAGCCcCCCg -3'
miRNA:   3'- -UUGACGUUguCAa-CGU-CGUUGGcGGG- -5'
14577 3' -53.3 NC_003521.1 + 187322 0.76 0.596684
Target:  5'- cGCUGCGACGcc-GCAGCAGCgGCCUc -3'
miRNA:   3'- uUGACGUUGUcaaCGUCGUUGgCGGG- -5'
14577 3' -53.3 NC_003521.1 + 125848 0.76 0.613157
Target:  5'- cAGCUuucGCAACAGgcgacugacgccGCAGCAGCCGCCg -3'
miRNA:   3'- -UUGA---CGUUGUCaa----------CGUCGUUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 223844 0.75 0.65855
Target:  5'- uACUGCAGCAGaaacUGCAGCucuucguGCUGCCa -3'
miRNA:   3'- uUGACGUUGUCa---ACGUCGu------UGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 76354 0.75 0.65855
Target:  5'- cGGCUGCGGCGGcggcaGCGGCGACCGUg- -3'
miRNA:   3'- -UUGACGUUGUCaa---CGUCGUUGGCGgg -5'
14577 3' -53.3 NC_003521.1 + 125886 0.74 0.709579
Target:  5'- cGCUGCGcgaGCAGcucucCAGCAGCCGCUCg -3'
miRNA:   3'- uUGACGU---UGUCaac--GUCGUUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 191692 0.73 0.739466
Target:  5'- ---cGCAACAGUccccGCAGCAGCgGCgCCg -3'
miRNA:   3'- uugaCGUUGUCAa---CGUCGUUGgCG-GG- -5'
14577 3' -53.3 NC_003521.1 + 98540 0.74 0.71962
Target:  5'- cGCUGCAGCGGcgGCGGguccCAGCCcgaGCCCg -3'
miRNA:   3'- uUGACGUUGUCaaCGUC----GUUGG---CGGG- -5'
14577 3' -53.3 NC_003521.1 + 180533 0.74 0.69947
Target:  5'- cGCUGCAGguGUUGUAGUugaAGCCuaGCCCc -3'
miRNA:   3'- uUGACGUUguCAACGUCG---UUGG--CGGG- -5'
14577 3' -53.3 NC_003521.1 + 38431 0.78 0.467658
Target:  5'- uGCUGCAACuGUUGCAGUuGCUGCUg -3'
miRNA:   3'- uUGACGUUGuCAACGUCGuUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 74903 0.74 0.731569
Target:  5'- aGACggugGCGGCGGUggagucggcccgGCAGCGcggggugguguacccGCCGCCCg -3'
miRNA:   3'- -UUGa---CGUUGUCAa-----------CGUCGU---------------UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 140559 0.78 0.486685
Target:  5'- uGCUGCGGCGGcgGCGGCGACaGCUCg -3'
miRNA:   3'- uUGACGUUGUCaaCGUCGUUGgCGGG- -5'
14577 3' -53.3 NC_003521.1 + 141117 0.75 0.679089
Target:  5'- -cCUGCGACc--UGCagaAGCGGCCGCCCg -3'
miRNA:   3'- uuGACGUUGucaACG---UCGUUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 172276 0.73 0.739466
Target:  5'- uGCUGCuGAUAGUUgGCGGCcgcuGCCGCCg -3'
miRNA:   3'- uUGACG-UUGUCAA-CGUCGu---UGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 126263 0.73 0.758931
Target:  5'- uACUGCAGCGGgaucucGCAACCGCgCCa -3'
miRNA:   3'- uUGACGUUGUCaacgu-CGUUGGCG-GG- -5'
14577 3' -53.3 NC_003521.1 + 110916 0.78 0.486685
Target:  5'- ---cGCAGCAGgcGC-GCGGCCGCCCc -3'
miRNA:   3'- uugaCGUUGUCaaCGuCGUUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 47658 0.76 0.617282
Target:  5'- cAGCUGCGcaACAGcaGCAGCAGaCGCCCc -3'
miRNA:   3'- -UUGACGU--UGUCaaCGUCGUUgGCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.