miRNA display CGI


Results 21 - 40 of 303 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14577 3' -53.3 NC_003521.1 + 170167 0.72 0.787249
Target:  5'- ---aGCAGCAGcUGCAGCAccaGCCGCa- -3'
miRNA:   3'- uugaCGUUGUCaACGUCGU---UGGCGgg -5'
14577 3' -53.3 NC_003521.1 + 160795 0.73 0.758931
Target:  5'- cAGCaGCAacaagaaacaGCAGccGCAGCAgaaGCCGCCCa -3'
miRNA:   3'- -UUGaCGU----------UGUCaaCGUCGU---UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 180533 0.74 0.69947
Target:  5'- cGCUGCAGguGUUGUAGUugaAGCCuaGCCCc -3'
miRNA:   3'- uUGACGUUguCAACGUCG---UUGG--CGGG- -5'
14577 3' -53.3 NC_003521.1 + 110916 0.78 0.486685
Target:  5'- ---cGCAGCAGgcGC-GCGGCCGCCCc -3'
miRNA:   3'- uugaCGUUGUCaaCGuCGUUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 110691 0.71 0.839818
Target:  5'- ---gGCGGCAGcgGCGGCG-CCGCCg -3'
miRNA:   3'- uugaCGUUGUCaaCGUCGUuGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 40229 0.72 0.796416
Target:  5'- aGGCggGCAGCGGUcGCAGgcGCCGCCUc -3'
miRNA:   3'- -UUGa-CGUUGUCAaCGUCguUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 135739 0.73 0.749251
Target:  5'- cGCUGCuacuGCGGUggugGCGGCGgugggAUCGCCCc -3'
miRNA:   3'- uUGACGu---UGUCAa---CGUCGU-----UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 140559 0.78 0.486685
Target:  5'- uGCUGCGGCGGcgGCGGCGACaGCUCg -3'
miRNA:   3'- uUGACGUUGUCaaCGUCGUUGgCGGG- -5'
14577 3' -53.3 NC_003521.1 + 208210 0.72 0.796416
Target:  5'- gAACUGCAGCAGUcGCAGguACagacaccagaGCCa -3'
miRNA:   3'- -UUGACGUUGUCAaCGUCguUGg---------CGGg -5'
14577 3' -53.3 NC_003521.1 + 38431 0.78 0.467658
Target:  5'- uGCUGCAACuGUUGCAGUuGCUGCUg -3'
miRNA:   3'- uUGACGUUGuCAACGUCGuUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 126263 0.73 0.758931
Target:  5'- uACUGCAGCGGgaucucGCAACCGCgCCa -3'
miRNA:   3'- uUGACGUUGUCaacgu-CGUUGGCG-GG- -5'
14577 3' -53.3 NC_003521.1 + 196860 0.72 0.787249
Target:  5'- -uCUGCGucaGCAuGUcgaGCAGCAGCCGCCg -3'
miRNA:   3'- uuGACGU---UGU-CAa--CGUCGUUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 74903 0.74 0.731569
Target:  5'- aGACggugGCGGCGGUggagucggcccgGCAGCGcggggugguguacccGCCGCCCg -3'
miRNA:   3'- -UUGa---CGUUGUCAa-----------CGUCGU---------------UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 125886 0.74 0.709579
Target:  5'- cGCUGCGcgaGCAGcucucCAGCAGCCGCUCg -3'
miRNA:   3'- uUGACGU---UGUCaac--GUCGUUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 223844 0.75 0.65855
Target:  5'- uACUGCAGCAGaaacUGCAGCucuucguGCUGCCa -3'
miRNA:   3'- uUGACGUUGUCa---ACGUCGu------UGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 187322 0.76 0.596684
Target:  5'- cGCUGCGACGcc-GCAGCAGCgGCCUc -3'
miRNA:   3'- uUGACGUUGUcaaCGUCGUUGgCGGG- -5'
14577 3' -53.3 NC_003521.1 + 15744 0.71 0.855889
Target:  5'- -cCUGCAGguGcgcccggGCAGCAGCaUGCCCg -3'
miRNA:   3'- uuGACGUUguCaa-----CGUCGUUG-GCGGG- -5'
14577 3' -53.3 NC_003521.1 + 71880 0.71 0.839818
Target:  5'- cGACgGCGACAGcgGCGGCccuGCCugcGCCCu -3'
miRNA:   3'- -UUGaCGUUGUCaaCGUCGu--UGG---CGGG- -5'
14577 3' -53.3 NC_003521.1 + 235261 0.72 0.823838
Target:  5'- uGACaGCGACGGacggaacaacgaugGCGGCGGCCGCgCCg -3'
miRNA:   3'- -UUGaCGUUGUCaa------------CGUCGUUGGCG-GG- -5'
14577 3' -53.3 NC_003521.1 + 74022 0.72 0.805433
Target:  5'- cGCaGCAGCAGcgGCGGCGGCauCGUCCg -3'
miRNA:   3'- uUGaCGUUGUCaaCGUCGUUG--GCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.