miRNA display CGI


Results 41 - 60 of 303 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14577 3' -53.3 NC_003521.1 + 198045 0.71 0.838994
Target:  5'- gGGCUGCAcggGCAGgugcuugaGCAGCAGCUuuuucuuGCCCu -3'
miRNA:   3'- -UUGACGU---UGUCaa------CGUCGUUGG-------CGGG- -5'
14577 3' -53.3 NC_003521.1 + 135739 0.73 0.749251
Target:  5'- cGCUGCuacuGCGGUggugGCGGCGgugggAUCGCCCc -3'
miRNA:   3'- uUGACGu---UGUCAa---CGUCGU-----UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 140559 0.78 0.486685
Target:  5'- uGCUGCGGCGGcgGCGGCGACaGCUCg -3'
miRNA:   3'- uUGACGUUGUCaaCGUCGUUGgCGGG- -5'
14577 3' -53.3 NC_003521.1 + 110850 0.72 0.83149
Target:  5'- cGGCaGCGACGGUgcacGUagAGCAGCgGCCCg -3'
miRNA:   3'- -UUGaCGUUGUCAa---CG--UCGUUGgCGGG- -5'
14577 3' -53.3 NC_003521.1 + 38431 0.78 0.467658
Target:  5'- uGCUGCAACuGUUGCAGUuGCUGCUg -3'
miRNA:   3'- uUGACGUUGuCAACGUCGuUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 97214 0.7 0.905359
Target:  5'- --gUGCAGCAG--GCAGCAGCCggugGCCg -3'
miRNA:   3'- uugACGUUGUCaaCGUCGUUGG----CGGg -5'
14577 3' -53.3 NC_003521.1 + 187322 0.76 0.596684
Target:  5'- cGCUGCGACGcc-GCAGCAGCgGCCUc -3'
miRNA:   3'- uUGACGUUGUcaaCGUCGUUGgCGGG- -5'
14577 3' -53.3 NC_003521.1 + 16980 0.7 0.898978
Target:  5'- cGCaGCAGCAGccgcaggGaCAGCAGgCGCCCg -3'
miRNA:   3'- uUGaCGUUGUCaa-----C-GUCGUUgGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 101866 0.7 0.892362
Target:  5'- gGACUGCGucauggguccGCAGggGauguaacagaAGCAGCCGCCg -3'
miRNA:   3'- -UUGACGU----------UGUCaaCg---------UCGUUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 16725 0.7 0.878437
Target:  5'- ---cGCGGCgAGUU-CGGCGACCGCCg -3'
miRNA:   3'- uugaCGUUG-UCAAcGUCGUUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 165181 0.71 0.869651
Target:  5'- gGACUGCGccGCuGUUGCcgucgucaucgucGGCGacugagccguggcGCCGCCCg -3'
miRNA:   3'- -UUGACGU--UGuCAACG-------------UCGU-------------UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 15744 0.71 0.855889
Target:  5'- -cCUGCAGguGcgcccggGCAGCAGCaUGCCCg -3'
miRNA:   3'- uuGACGUUguCaa-----CGUCGUUG-GCGGG- -5'
14577 3' -53.3 NC_003521.1 + 71880 0.71 0.839818
Target:  5'- cGACgGCGACAGcgGCGGCccuGCCugcGCCCu -3'
miRNA:   3'- -UUGaCGUUGUCaaCGUCGu--UGG---CGGG- -5'
14577 3' -53.3 NC_003521.1 + 190536 0.72 0.81429
Target:  5'- gAGgUGCGGCGGcaGCAGCGGCgGaCCCg -3'
miRNA:   3'- -UUgACGUUGUCaaCGUCGUUGgC-GGG- -5'
14577 3' -53.3 NC_003521.1 + 208210 0.72 0.796416
Target:  5'- gAACUGCAGCAGUcGCAGguACagacaccagaGCCa -3'
miRNA:   3'- -UUGACGUUGUCAaCGUCguUGg---------CGGg -5'
14577 3' -53.3 NC_003521.1 + 170167 0.72 0.787249
Target:  5'- ---aGCAGCAGcUGCAGCAccaGCCGCa- -3'
miRNA:   3'- uugaCGUUGUCaACGUCGU---UGGCGgg -5'
14577 3' -53.3 NC_003521.1 + 160795 0.73 0.758931
Target:  5'- cAGCaGCAacaagaaacaGCAGccGCAGCAgaaGCCGCCCa -3'
miRNA:   3'- -UUGaCGU----------UGUCaaCGUCGU---UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 74903 0.74 0.731569
Target:  5'- aGACggugGCGGCGGUggagucggcccgGCAGCGcggggugguguacccGCCGCCCg -3'
miRNA:   3'- -UUGa---CGUUGUCAa-----------CGUCGU---------------UGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 125886 0.74 0.709579
Target:  5'- cGCUGCGcgaGCAGcucucCAGCAGCCGCUCg -3'
miRNA:   3'- uUGACGU---UGUCaac--GUCGUUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 223844 0.75 0.65855
Target:  5'- uACUGCAGCAGaaacUGCAGCucuucguGCUGCCa -3'
miRNA:   3'- uUGACGUUGUCa---ACGUCGu------UGGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.