miRNA display CGI


Results 61 - 80 of 303 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14577 3' -53.3 NC_003521.1 + 71880 0.71 0.839818
Target:  5'- cGACgGCGACAGcgGCGGCccuGCCugcGCCCu -3'
miRNA:   3'- -UUGaCGUUGUCaaCGUCGu--UGG---CGGG- -5'
14577 3' -53.3 NC_003521.1 + 96525 0.71 0.862856
Target:  5'- gAACcGCAGCGcGUgcgGCAGCAGCgagucgccgugcuCGCCCa -3'
miRNA:   3'- -UUGaCGUUGU-CAa--CGUCGUUG-------------GCGGG- -5'
14577 3' -53.3 NC_003521.1 + 125848 0.76 0.613157
Target:  5'- cAGCUuucGCAACAGgcgacugacgccGCAGCAGCCGCCg -3'
miRNA:   3'- -UUGA---CGUUGUCaa----------CGUCGUUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 76354 0.75 0.65855
Target:  5'- cGGCUGCGGCGGcggcaGCGGCGACCGUg- -3'
miRNA:   3'- -UUGACGUUGUCaa---CGUCGUUGGCGgg -5'
14577 3' -53.3 NC_003521.1 + 161235 0.74 0.709579
Target:  5'- uGGCgGCGGCAGcgGCAGUAGCgGCCa -3'
miRNA:   3'- -UUGaCGUUGUCaaCGUCGUUGgCGGg -5'
14577 3' -53.3 NC_003521.1 + 172276 0.73 0.739466
Target:  5'- uGCUGCuGAUAGUUgGCGGCcgcuGCCGCCg -3'
miRNA:   3'- uUGACG-UUGUCAA-CGUCGu---UGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 95223 0.73 0.758931
Target:  5'- cGACUGCAGCAGcgagGCcaCGGCCGCCg -3'
miRNA:   3'- -UUGACGUUGUCaa--CGucGUUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 196860 0.72 0.787249
Target:  5'- -uCUGCGucaGCAuGUcgaGCAGCAGCCGCCg -3'
miRNA:   3'- uuGACGU---UGU-CAa--CGUCGUUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 40229 0.72 0.796416
Target:  5'- aGGCggGCAGCGGUcGCAGgcGCCGCCUc -3'
miRNA:   3'- -UUGa-CGUUGUCAaCGUCguUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 90139 0.72 0.822978
Target:  5'- cGCaGCAGCAGcccaGCAGCAGCgGCgCCg -3'
miRNA:   3'- uUGaCGUUGUCaa--CGUCGUUGgCG-GG- -5'
14577 3' -53.3 NC_003521.1 + 125416 0.68 0.947718
Target:  5'- cGCUGagucCGGagGCcguGGCGGCCGCCCg -3'
miRNA:   3'- uUGACguu-GUCaaCG---UCGUUGGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 102772 0.68 0.943269
Target:  5'- ---cGCGGCGGUcGCgGGCGACCcacGCCCc -3'
miRNA:   3'- uugaCGUUGUCAaCG-UCGUUGG---CGGG- -5'
14577 3' -53.3 NC_003521.1 + 103645 0.7 0.878437
Target:  5'- cAGCggggGCAGCucg-GCGGCGGCCGCUg -3'
miRNA:   3'- -UUGa---CGUUGucaaCGUCGUUGGCGGg -5'
14577 3' -53.3 NC_003521.1 + 156166 0.7 0.878437
Target:  5'- uGCUGCGACGccugUGCGGCAucUCGCCg -3'
miRNA:   3'- uUGACGUUGUca--ACGUCGUu-GGCGGg -5'
14577 3' -53.3 NC_003521.1 + 16980 0.7 0.898978
Target:  5'- cGCaGCAGCAGccgcaggGaCAGCAGgCGCCCg -3'
miRNA:   3'- uUGaCGUUGUCaa-----C-GUCGUUgGCGGG- -5'
14577 3' -53.3 NC_003521.1 + 97214 0.7 0.905359
Target:  5'- --gUGCAGCAG--GCAGCAGCCggugGCCg -3'
miRNA:   3'- uugACGUUGUCaaCGUCGUUGG----CGGg -5'
14577 3' -53.3 NC_003521.1 + 240620 0.69 0.911501
Target:  5'- ---cGCGGCGGcgUGCGGCGgGCCGgCCg -3'
miRNA:   3'- uugaCGUUGUCa-ACGUCGU-UGGCgGG- -5'
14577 3' -53.3 NC_003521.1 + 196986 0.69 0.921949
Target:  5'- -cCUGUGACGGgcccgcggccgGCGGCGGCUGaCCCg -3'
miRNA:   3'- uuGACGUUGUCaa---------CGUCGUUGGC-GGG- -5'
14577 3' -53.3 NC_003521.1 + 163350 0.69 0.93365
Target:  5'- -gUUGUAGCGGUaGCAGCGGCgGCg- -3'
miRNA:   3'- uuGACGUUGUCAaCGUCGUUGgCGgg -5'
14577 3' -53.3 NC_003521.1 + 227641 0.69 0.93858
Target:  5'- ---gGCGuGCAGUgaCAGCGGCCGUCCg -3'
miRNA:   3'- uugaCGU-UGUCAacGUCGUUGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.