miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14578 3' -58.9 NC_003521.1 + 114912 0.66 0.912519
Target:  5'- gGACCUgGAcgugucCCuCGAGCggcuGCUGGaGAGCu -3'
miRNA:   3'- gCUGGAgCU------GGcGCUCG----UGACC-CUCG- -5'
14578 3' -58.9 NC_003521.1 + 122659 0.66 0.912519
Target:  5'- gGGCgUCGuCUGCG-GCGgUGGGguGGCg -3'
miRNA:   3'- gCUGgAGCuGGCGCuCGUgACCC--UCG- -5'
14578 3' -58.9 NC_003521.1 + 29262 0.66 0.911958
Target:  5'- aCGACCa--GCCGCucuucauGAGUAC-GGGGGCg -3'
miRNA:   3'- -GCUGGagcUGGCG-------CUCGUGaCCCUCG- -5'
14578 3' -58.9 NC_003521.1 + 192318 0.66 0.911958
Target:  5'- gCGGCgUCGgcggcACCGUGGGUACcgucagaUGGGuGCu -3'
miRNA:   3'- -GCUGgAGC-----UGGCGCUCGUG-------ACCCuCG- -5'
14578 3' -58.9 NC_003521.1 + 27876 0.66 0.906824
Target:  5'- gGACCUCGACCGCa--UGgaGGcGGGCu -3'
miRNA:   3'- gCUGGAGCUGGCGcucGUgaCC-CUCG- -5'
14578 3' -58.9 NC_003521.1 + 151087 0.66 0.906824
Target:  5'- gGACCgcCGACCccucggguCGGGcCGCUGGGGGa -3'
miRNA:   3'- gCUGGa-GCUGGc-------GCUC-GUGACCCUCg -5'
14578 3' -58.9 NC_003521.1 + 86260 0.66 0.906824
Target:  5'- gCGAagUCGGCCgGCGAgGCGaagUUGGGGGUg -3'
miRNA:   3'- -GCUggAGCUGG-CGCU-CGU---GACCCUCG- -5'
14578 3' -58.9 NC_003521.1 + 55906 0.66 0.906824
Target:  5'- cCGACCcucCGACgGCGgcGGCAacGGGGGUg -3'
miRNA:   3'- -GCUGGa--GCUGgCGC--UCGUgaCCCUCG- -5'
14578 3' -58.9 NC_003521.1 + 145006 0.66 0.906243
Target:  5'- aGGCCUCGcgcGCCGacaucgcCGAcGCGCUGGaucgcguggccGAGCg -3'
miRNA:   3'- gCUGGAGC---UGGC-------GCU-CGUGACC-----------CUCG- -5'
14578 3' -58.9 NC_003521.1 + 4160 0.66 0.905074
Target:  5'- aGACCaUGAcacCCGCGguucaGGCAgaggaggacucucuCUGGGAGCu -3'
miRNA:   3'- gCUGGaGCU---GGCGC-----UCGU--------------GACCCUCG- -5'
14578 3' -58.9 NC_003521.1 + 195401 0.66 0.90092
Target:  5'- uGACCgcgcCGACgGCGGGCACcggcuaccUGGugaaaacccagGAGCg -3'
miRNA:   3'- gCUGGa---GCUGgCGCUCGUG--------ACC-----------CUCG- -5'
14578 3' -58.9 NC_003521.1 + 71216 0.66 0.90092
Target:  5'- -cGCCUCGuccccuacaACCGCG-GCACUGacAGCa -3'
miRNA:   3'- gcUGGAGC---------UGGCGCuCGUGACccUCG- -5'
14578 3' -58.9 NC_003521.1 + 70139 0.66 0.90092
Target:  5'- gGGCCUCGagcuGCgGCGAGCGC-GGcuGCc -3'
miRNA:   3'- gCUGGAGC----UGgCGCUCGUGaCCcuCG- -5'
14578 3' -58.9 NC_003521.1 + 17668 0.66 0.90092
Target:  5'- gCGGCCUCcaGACUGCGGGCGugguuCUcGcGGAGg -3'
miRNA:   3'- -GCUGGAG--CUGGCGCUCGU-----GA-C-CCUCg -5'
14578 3' -58.9 NC_003521.1 + 129821 0.66 0.90092
Target:  5'- gGugCUgGGCCGCcuGCuGCUGGG-GCc -3'
miRNA:   3'- gCugGAgCUGGCGcuCG-UGACCCuCG- -5'
14578 3' -58.9 NC_003521.1 + 103589 0.66 0.90092
Target:  5'- uCGGCCcCGGCCG-GuGCGC-GGGGGa -3'
miRNA:   3'- -GCUGGaGCUGGCgCuCGUGaCCCUCg -5'
14578 3' -58.9 NC_003521.1 + 136619 0.66 0.899108
Target:  5'- gGGCUgcagcagcacguaaUCGGCCaCGGGCGCgGGGcGGCg -3'
miRNA:   3'- gCUGG--------------AGCUGGcGCUCGUGaCCC-UCG- -5'
14578 3' -58.9 NC_003521.1 + 203056 0.66 0.89481
Target:  5'- gGAUCUCGACgaaucaCGCUGGGAGCc -3'
miRNA:   3'- gCUGGAGCUGgcgcucGUGACCCUCG- -5'
14578 3' -58.9 NC_003521.1 + 144757 0.66 0.89481
Target:  5'- uGACC-CGGCUGCuGGCGguCUGGGAc- -3'
miRNA:   3'- gCUGGaGCUGGCGcUCGU--GACCCUcg -5'
14578 3' -58.9 NC_003521.1 + 112446 0.66 0.89481
Target:  5'- gCGGCCcaggCGGCCcugGUGGGCGCgcccgGcGGGGCc -3'
miRNA:   3'- -GCUGGa---GCUGG---CGCUCGUGa----C-CCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.