miRNA display CGI


Results 21 - 40 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14578 3' -58.9 NC_003521.1 + 112446 0.66 0.89481
Target:  5'- gCGGCCcaggCGGCCcugGUGGGCGCgcccgGcGGGGCc -3'
miRNA:   3'- -GCUGGa---GCUGG---CGCUCGUGa----C-CCUCG- -5'
14578 3' -58.9 NC_003521.1 + 144757 0.66 0.89481
Target:  5'- uGACC-CGGCUGCuGGCGguCUGGGAc- -3'
miRNA:   3'- gCUGGaGCUGGCGcUCGU--GACCCUcg -5'
14578 3' -58.9 NC_003521.1 + 29373 0.66 0.89481
Target:  5'- uGGCCUgcccCGACCGCGAG-GCcGaGGAGg -3'
miRNA:   3'- gCUGGA----GCUGGCGCUCgUGaC-CCUCg -5'
14578 3' -58.9 NC_003521.1 + 188467 0.66 0.894187
Target:  5'- aCGcGCCUCcgagcuacgagcaGGCCGUGGGC-CUGGGuccGCc -3'
miRNA:   3'- -GC-UGGAG-------------CUGGCGCUCGuGACCCu--CG- -5'
14578 3' -58.9 NC_003521.1 + 90867 0.66 0.888495
Target:  5'- uGACCaCGGCCGagGGGgACgGGGAGg -3'
miRNA:   3'- gCUGGaGCUGGCg-CUCgUGaCCCUCg -5'
14578 3' -58.9 NC_003521.1 + 155088 0.66 0.888495
Target:  5'- uGGCCaaGuuCGCG-GCGCUGcaGGAGCa -3'
miRNA:   3'- gCUGGagCugGCGCuCGUGAC--CCUCG- -5'
14578 3' -58.9 NC_003521.1 + 18258 0.66 0.888495
Target:  5'- -cGCCUCuGCUGCGAGUgguACgUGGuGGGCa -3'
miRNA:   3'- gcUGGAGcUGGCGCUCG---UG-ACC-CUCG- -5'
14578 3' -58.9 NC_003521.1 + 142306 0.66 0.888495
Target:  5'- gCGGCC-CaGCCGCGcGCgucgucgcaACUGGGuGCg -3'
miRNA:   3'- -GCUGGaGcUGGCGCuCG---------UGACCCuCG- -5'
14578 3' -58.9 NC_003521.1 + 123647 0.66 0.888495
Target:  5'- gCGGCagCGACgGCGGGUuagGCUuggaGGGAGCc -3'
miRNA:   3'- -GCUGgaGCUGgCGCUCG---UGA----CCCUCG- -5'
14578 3' -58.9 NC_003521.1 + 233014 0.66 0.887853
Target:  5'- uGGCCUUGacgccguccagcuGCCGCuucGAGCGCUGGuGuaaGGCu -3'
miRNA:   3'- gCUGGAGC-------------UGGCG---CUCGUGACC-C---UCG- -5'
14578 3' -58.9 NC_003521.1 + 123559 0.66 0.887853
Target:  5'- aCGGCCgacgaCGGCgGUGgcgggauggcggcGGCGCcGGGAGCc -3'
miRNA:   3'- -GCUGGa----GCUGgCGC-------------UCGUGaCCCUCG- -5'
14578 3' -58.9 NC_003521.1 + 168056 0.66 0.88198
Target:  5'- -uGCCgcCGACgGCGGGUGCUcgagacgcgGGGGGCu -3'
miRNA:   3'- gcUGGa-GCUGgCGCUCGUGA---------CCCUCG- -5'
14578 3' -58.9 NC_003521.1 + 186734 0.66 0.88198
Target:  5'- aCGACCU--GCUagGCGAGCccauGCUGGG-GCu -3'
miRNA:   3'- -GCUGGAgcUGG--CGCUCG----UGACCCuCG- -5'
14578 3' -58.9 NC_003521.1 + 156886 0.66 0.88198
Target:  5'- gCGGCCgcuGcCCGauGGCACgGGGGGCg -3'
miRNA:   3'- -GCUGGag-CuGGCgcUCGUGaCCCUCG- -5'
14578 3' -58.9 NC_003521.1 + 184998 0.66 0.88198
Target:  5'- cCGGCCU--GCCGCGcuGCgACUGGuucGAGCg -3'
miRNA:   3'- -GCUGGAgcUGGCGCu-CG-UGACC---CUCG- -5'
14578 3' -58.9 NC_003521.1 + 34970 0.66 0.880653
Target:  5'- uCGGCCa-GAUCGCGGGCGCagaaggucuccgGGGccAGCg -3'
miRNA:   3'- -GCUGGagCUGGCGCUCGUGa-----------CCC--UCG- -5'
14578 3' -58.9 NC_003521.1 + 150275 0.67 0.875268
Target:  5'- cCGGCCUC--UCGUGGGUGCUGucgcGGGGCc -3'
miRNA:   3'- -GCUGGAGcuGGCGCUCGUGAC----CCUCG- -5'
14578 3' -58.9 NC_003521.1 + 35144 0.67 0.875268
Target:  5'- uGGCCUaccUGACCGUGGGCAU---GAGCc -3'
miRNA:   3'- gCUGGA---GCUGGCGCUCGUGaccCUCG- -5'
14578 3' -58.9 NC_003521.1 + 46374 0.67 0.875268
Target:  5'- aCGACg-CGGCUGUGAgggGCGCgGGGuGCg -3'
miRNA:   3'- -GCUGgaGCUGGCGCU---CGUGaCCCuCG- -5'
14578 3' -58.9 NC_003521.1 + 212716 0.67 0.875268
Target:  5'- gGGCCUCGAUCuuggGCGAGCGcCUGcucGGCu -3'
miRNA:   3'- gCUGGAGCUGG----CGCUCGU-GACcc-UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.