miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14578 5' -54 NC_003521.1 + 22347 0.66 0.987761
Target:  5'- cGACGUCCgggGC-CaCUGCGCCCa---- -3'
miRNA:   3'- cCUGCGGGa--CGuG-GAUGUGGGauuuc -5'
14578 5' -54 NC_003521.1 + 140906 0.66 0.987761
Target:  5'- -uACGCCCUGCGCa-ACGCCg----- -3'
miRNA:   3'- ccUGCGGGACGUGgaUGUGGgauuuc -5'
14578 5' -54 NC_003521.1 + 120338 0.66 0.987761
Target:  5'- cGGugGCCgCUGCugCUGC-UUCggacGAAGg -3'
miRNA:   3'- -CCugCGG-GACGugGAUGuGGGa---UUUC- -5'
14578 5' -54 NC_003521.1 + 72920 0.66 0.987761
Target:  5'- cGGCGCCC--CACCUGcCGCUCUAc-- -3'
miRNA:   3'- cCUGCGGGacGUGGAU-GUGGGAUuuc -5'
14578 5' -54 NC_003521.1 + 126215 0.66 0.987761
Target:  5'- gGGGCGCCCaUGacgaACC-ACAUCUUGAu- -3'
miRNA:   3'- -CCUGCGGG-ACg---UGGaUGUGGGAUUuc -5'
14578 5' -54 NC_003521.1 + 176328 0.66 0.987761
Target:  5'- aGGCGUCCguaGCGCuUUAgGCCCUGAu- -3'
miRNA:   3'- cCUGCGGGa--CGUG-GAUgUGGGAUUuc -5'
14578 5' -54 NC_003521.1 + 37401 0.66 0.987761
Target:  5'- gGGGCGCCC-GgGCCUugugcgACGgCCUGGGa -3'
miRNA:   3'- -CCUGCGGGaCgUGGA------UGUgGGAUUUc -5'
14578 5' -54 NC_003521.1 + 191008 0.66 0.987761
Target:  5'- cGGCGCaCUGCACg-GCGCCCa---- -3'
miRNA:   3'- cCUGCGgGACGUGgaUGUGGGauuuc -5'
14578 5' -54 NC_003521.1 + 95579 0.66 0.987761
Target:  5'- aGGCGCCCUGCAg--GCAgCCgcucacGAAGg -3'
miRNA:   3'- cCUGCGGGACGUggaUGUgGGa-----UUUC- -5'
14578 5' -54 NC_003521.1 + 137316 0.66 0.987761
Target:  5'- -cGCGCgCCUGCugCUGggcuCGCCCUu--- -3'
miRNA:   3'- ccUGCG-GGACGugGAU----GUGGGAuuuc -5'
14578 5' -54 NC_003521.1 + 113554 0.66 0.987761
Target:  5'- cGGACGUgCcGCGCCUggGCGCCaUGGAc -3'
miRNA:   3'- -CCUGCGgGaCGUGGA--UGUGGgAUUUc -5'
14578 5' -54 NC_003521.1 + 119281 0.66 0.987761
Target:  5'- uGGugGCCgaGCA-CUACAUgaaggucuaCCUGGAGu -3'
miRNA:   3'- -CCugCGGgaCGUgGAUGUG---------GGAUUUC- -5'
14578 5' -54 NC_003521.1 + 196738 0.66 0.987761
Target:  5'- uGGugGCggcgGCGCCUGCACCg----- -3'
miRNA:   3'- -CCugCGgga-CGUGGAUGUGGgauuuc -5'
14578 5' -54 NC_003521.1 + 133937 0.66 0.987463
Target:  5'- uGGugGCgCUGCGCCgcuacuaccguCACCgUAcGGg -3'
miRNA:   3'- -CCugCGgGACGUGGau---------GUGGgAUuUC- -5'
14578 5' -54 NC_003521.1 + 16219 0.66 0.986216
Target:  5'- cGGCGCCCUGCcGCCUG-GCCg----- -3'
miRNA:   3'- cCUGCGGGACG-UGGAUgUGGgauuuc -5'
14578 5' -54 NC_003521.1 + 170413 0.66 0.986216
Target:  5'- cGGugGCcuuCCUGCGCUUcgaacgcuacgACGCCCg---- -3'
miRNA:   3'- -CCugCG---GGACGUGGA-----------UGUGGGauuuc -5'
14578 5' -54 NC_003521.1 + 156513 0.66 0.986216
Target:  5'- --uCGCCCgUGCagACCUACACgCUcGAAGg -3'
miRNA:   3'- ccuGCGGG-ACG--UGGAUGUGgGA-UUUC- -5'
14578 5' -54 NC_003521.1 + 71297 0.66 0.986216
Target:  5'- cGGGC-CCCUgggGCACCaGCACCU--GGGg -3'
miRNA:   3'- -CCUGcGGGA---CGUGGaUGUGGGauUUC- -5'
14578 5' -54 NC_003521.1 + 60687 0.66 0.986216
Target:  5'- aGGugGCgCUGCuCCUGgACCUg---- -3'
miRNA:   3'- -CCugCGgGACGuGGAUgUGGGauuuc -5'
14578 5' -54 NC_003521.1 + 238649 0.66 0.986216
Target:  5'- aGACaGCUCUGCACUgaagACACUCUc--- -3'
miRNA:   3'- cCUG-CGGGACGUGGa---UGUGGGAuuuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.