miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14578 5' -54 NC_003521.1 + 6682 0.66 0.982681
Target:  5'- --uCGUgCUGCaggGCCUGCGCCCgcGAGc -3'
miRNA:   3'- ccuGCGgGACG---UGGAUGUGGGauUUC- -5'
14578 5' -54 NC_003521.1 + 130139 0.66 0.986216
Target:  5'- cGGCGCCgccgCUGCcgccaccgaGCgCUACGCCCUGGc- -3'
miRNA:   3'- cCUGCGG----GACG---------UG-GAUGUGGGAUUuc -5'
14578 5' -54 NC_003521.1 + 71297 0.66 0.986216
Target:  5'- cGGGC-CCCUgggGCACCaGCACCU--GGGg -3'
miRNA:   3'- -CCUGcGGGA---CGUGGaUGUGGGauUUC- -5'
14578 5' -54 NC_003521.1 + 104129 0.66 0.980676
Target:  5'- cGGCGUCCUGCucggGCC--CGCCCUGc-- -3'
miRNA:   3'- cCUGCGGGACG----UGGauGUGGGAUuuc -5'
14578 5' -54 NC_003521.1 + 62702 0.66 0.982681
Target:  5'- gGGAccCGCCCUGC-CCgAgGCCCa---- -3'
miRNA:   3'- -CCU--GCGGGACGuGGaUgUGGGauuuc -5'
14578 5' -54 NC_003521.1 + 148507 0.66 0.980676
Target:  5'- uGGAgGCCCaugccgcggcUGCGCCUccucccGCGCCUUccccGAGGa -3'
miRNA:   3'- -CCUgCGGG----------ACGUGGA------UGUGGGA----UUUC- -5'
14578 5' -54 NC_003521.1 + 59226 0.66 0.982681
Target:  5'- cGGgGCCCUGg----ACGCCCUGGAGg -3'
miRNA:   3'- cCUgCGGGACguggaUGUGGGAUUUC- -5'
14578 5' -54 NC_003521.1 + 133937 0.66 0.987463
Target:  5'- uGGugGCgCUGCGCCgcuacuaccguCACCgUAcGGg -3'
miRNA:   3'- -CCugCGgGACGUGGau---------GUGGgAUuUC- -5'
14578 5' -54 NC_003521.1 + 140906 0.66 0.987761
Target:  5'- -uACGCCCUGCGCa-ACGCCg----- -3'
miRNA:   3'- ccUGCGGGACGUGgaUGUGGgauuuc -5'
14578 5' -54 NC_003521.1 + 234073 0.66 0.984525
Target:  5'- uGGACGCCCUgggacucggcgaGCGCUggcUGCgucagGCCCUGc-- -3'
miRNA:   3'- -CCUGCGGGA------------CGUGG---AUG-----UGGGAUuuc -5'
14578 5' -54 NC_003521.1 + 156513 0.66 0.986216
Target:  5'- --uCGCCCgUGCagACCUACACgCUcGAAGg -3'
miRNA:   3'- ccuGCGGG-ACG--UGGAUGUGgGA-UUUC- -5'
14578 5' -54 NC_003521.1 + 191008 0.66 0.987761
Target:  5'- cGGCGCaCUGCACg-GCGCCCa---- -3'
miRNA:   3'- cCUGCGgGACGUGgaUGUGGGauuuc -5'
14578 5' -54 NC_003521.1 + 88980 0.66 0.982681
Target:  5'- -aGCGCCCUGUACCUGuuCUUcGAGGa -3'
miRNA:   3'- ccUGCGGGACGUGGAUguGGGaUUUC- -5'
14578 5' -54 NC_003521.1 + 106270 0.66 0.980676
Target:  5'- uGGACGagCUGCGCau-CGCCgUGGAGg -3'
miRNA:   3'- -CCUGCggGACGUGgauGUGGgAUUUC- -5'
14578 5' -54 NC_003521.1 + 113554 0.66 0.987761
Target:  5'- cGGACGUgCcGCGCCUggGCGCCaUGGAc -3'
miRNA:   3'- -CCUGCGgGaCGUGGA--UGUGGgAUUUc -5'
14578 5' -54 NC_003521.1 + 61344 0.66 0.980676
Target:  5'- -cGCGUcaCCUGCACCUGCccacgGCCCg---- -3'
miRNA:   3'- ccUGCG--GGACGUGGAUG-----UGGGauuuc -5'
14578 5' -54 NC_003521.1 + 60687 0.66 0.986216
Target:  5'- aGGugGCgCUGCuCCUGgACCUg---- -3'
miRNA:   3'- -CCugCGgGACGuGGAUgUGGGauuuc -5'
14578 5' -54 NC_003521.1 + 120338 0.66 0.987761
Target:  5'- cGGugGCCgCUGCugCUGC-UUCggacGAAGg -3'
miRNA:   3'- -CCugCGG-GACGugGAUGuGGGa---UUUC- -5'
14578 5' -54 NC_003521.1 + 106555 0.66 0.980676
Target:  5'- uGGAgcagcUGCagaaCCUGCACCggguCACCCUGgccGAGg -3'
miRNA:   3'- -CCU-----GCG----GGACGUGGau--GUGGGAU---UUC- -5'
14578 5' -54 NC_003521.1 + 235156 0.66 0.982681
Target:  5'- cGGGCGCCCgUGUcucgACCcccCACCCUc--- -3'
miRNA:   3'- -CCUGCGGG-ACG----UGGau-GUGGGAuuuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.