miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14579 3' -60.9 NC_003521.1 + 69760 0.66 0.79924
Target:  5'- -uGGCACaagugcaugaUCggacggGCGAGCCGGGGgUGAa -3'
miRNA:   3'- uuCCGUG----------AGa-----CGCUCGGCCUCgGCUc -5'
14579 3' -60.9 NC_003521.1 + 199838 0.66 0.79924
Target:  5'- uGGGGgAUgcccccgCUGCGAuucuGUCGGGGUCGAGg -3'
miRNA:   3'- -UUCCgUGa------GACGCU----CGGCCUCGGCUC- -5'
14579 3' -60.9 NC_003521.1 + 112972 0.66 0.79924
Target:  5'- uGGGCAacCUGCccgacGGGCUGGcGCCGGGg -3'
miRNA:   3'- uUCCGUgaGACG-----CUCGGCCuCGGCUC- -5'
14579 3' -60.9 NC_003521.1 + 167740 0.66 0.79924
Target:  5'- -uGGCGC--UGCGguGGCCggcGGAGCUGAGg -3'
miRNA:   3'- uuCCGUGagACGC--UCGG---CCUCGGCUC- -5'
14579 3' -60.9 NC_003521.1 + 67661 0.66 0.790624
Target:  5'- --uGCACUgcCUGUG-GCUGGAGCUGAa -3'
miRNA:   3'- uucCGUGA--GACGCuCGGCCUCGGCUc -5'
14579 3' -60.9 NC_003521.1 + 24168 0.66 0.790624
Target:  5'- cGGGGCACUCggaaaggaGCGaAGCCGGgcGGCaUGGGc -3'
miRNA:   3'- -UUCCGUGAGa-------CGC-UCGGCC--UCG-GCUC- -5'
14579 3' -60.9 NC_003521.1 + 104881 0.66 0.789755
Target:  5'- cAGGCGCcCgagGCGucgcacaucccgcGGCCGuGGCCGAGg -3'
miRNA:   3'- uUCCGUGaGa--CGC-------------UCGGCcUCGGCUC- -5'
14579 3' -60.9 NC_003521.1 + 136129 0.66 0.785391
Target:  5'- cGAGGCGCUCUaccccgugGCGcgccgccaccaccuGCUGGAGCCcaucGAGg -3'
miRNA:   3'- -UUCCGUGAGA--------CGCu-------------CGGCCUCGG----CUC- -5'
14579 3' -60.9 NC_003521.1 + 122700 0.66 0.781878
Target:  5'- uGGGCGuCUCgGCgGGGCUGGAGgCGGu -3'
miRNA:   3'- uUCCGU-GAGaCG-CUCGGCCUCgGCUc -5'
14579 3' -60.9 NC_003521.1 + 7403 0.66 0.781878
Target:  5'- cGAGGCcgUCggaGCcaccgGGGCCaGGAGCCGAGa -3'
miRNA:   3'- -UUCCGugAGa--CG-----CUCGG-CCUCGGCUC- -5'
14579 3' -60.9 NC_003521.1 + 193250 0.66 0.773903
Target:  5'- uGGGGUACcccggauacggucggCUGCgGAGCgGGuGCCGGGa -3'
miRNA:   3'- -UUCCGUGa--------------GACG-CUCGgCCuCGGCUC- -5'
14579 3' -60.9 NC_003521.1 + 196880 0.66 0.77301
Target:  5'- -cGGCACcgCggGUGAgGCCGGGGCgGAa -3'
miRNA:   3'- uuCCGUGa-Ga-CGCU-CGGCCUCGgCUc -5'
14579 3' -60.9 NC_003521.1 + 56236 0.66 0.77301
Target:  5'- -uGGCACgaUGCcauGUCGGGGCUGAGg -3'
miRNA:   3'- uuCCGUGagACGcu-CGGCCUCGGCUC- -5'
14579 3' -60.9 NC_003521.1 + 36671 0.66 0.764029
Target:  5'- uGGGGguCUCgGcCGAGCUGaGGCCGGGc -3'
miRNA:   3'- -UUCCguGAGaC-GCUCGGCcUCGGCUC- -5'
14579 3' -60.9 NC_003521.1 + 113344 0.67 0.736476
Target:  5'- cGGGGgGCUUccaggggGaCGGGCCGGGGgCGAGg -3'
miRNA:   3'- -UUCCgUGAGa------C-GCUCGGCCUCgGCUC- -5'
14579 3' -60.9 NC_003521.1 + 149417 0.67 0.727116
Target:  5'- -cGGuCGCcCUGUGGGCCGGgauuugGGUCGGGg -3'
miRNA:   3'- uuCC-GUGaGACGCUCGGCC------UCGGCUC- -5'
14579 3' -60.9 NC_003521.1 + 154300 0.67 0.708182
Target:  5'- -cGGCACg--GCGu-CCGGGGCCGAc -3'
miRNA:   3'- uuCCGUGagaCGCucGGCCUCGGCUc -5'
14579 3' -60.9 NC_003521.1 + 45722 0.67 0.708182
Target:  5'- cGGGGCG-UCUGCGGGaCgCGGgucaGGCCGGGu -3'
miRNA:   3'- -UUCCGUgAGACGCUC-G-GCC----UCGGCUC- -5'
14579 3' -60.9 NC_003521.1 + 150516 0.68 0.67936
Target:  5'- cGGGGC-C-CUGCuagGAGCgGGAGCCGuGg -3'
miRNA:   3'- -UUCCGuGaGACG---CUCGgCCUCGGCuC- -5'
14579 3' -60.9 NC_003521.1 + 185104 0.68 0.669671
Target:  5'- gGAGGCGCUgcGCGccgacauGCUGGAGCaCGGGa -3'
miRNA:   3'- -UUCCGUGAgaCGCu------CGGCCUCG-GCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.