miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14579 5' -59.3 NC_003521.1 + 27793 0.66 0.86693
Target:  5'- aCUCcgGCCCGcUCG-GCCGGCu---- -3'
miRNA:   3'- aGGGuaCGGGC-AGCaCGGCCGucuua -5'
14579 5' -59.3 NC_003521.1 + 38512 0.66 0.86693
Target:  5'- gUUCCAgcaGCagaaGUCGgGCCGGCGGAGc -3'
miRNA:   3'- -AGGGUa--CGgg--CAGCaCGGCCGUCUUa -5'
14579 5' -59.3 NC_003521.1 + 238739 0.66 0.86693
Target:  5'- gUUCCAgcaGCagaaGUCGgGCCGGCGGAGc -3'
miRNA:   3'- -AGGGUa--CGgg--CAGCaCGGCCGUCUUa -5'
14579 5' -59.3 NC_003521.1 + 56226 0.66 0.865495
Target:  5'- cUCCCcgaaguggcacgAUGCCaUGUCGgggcugaggcagGCCGGCAGGc- -3'
miRNA:   3'- -AGGG------------UACGG-GCAGCa-----------CGGCCGUCUua -5'
14579 5' -59.3 NC_003521.1 + 82916 0.66 0.858941
Target:  5'- cUCUCAU-CCgGUCuggacaaGUGCCGGUAGAGg -3'
miRNA:   3'- -AGGGUAcGGgCAG-------CACGGCCGUCUUa -5'
14579 5' -59.3 NC_003521.1 + 63658 0.66 0.857464
Target:  5'- cCCCGUGCCCGUgaaccagagcuucgUGUGUCuGCGGc-- -3'
miRNA:   3'- aGGGUACGGGCA--------------GCACGGcCGUCuua -5'
14579 5' -59.3 NC_003521.1 + 44043 0.66 0.85148
Target:  5'- gUCCCGUuuaccgcGCCCGcggUCGcGCCGGCcGGGg -3'
miRNA:   3'- -AGGGUA-------CGGGC---AGCaCGGCCGuCUUa -5'
14579 5' -59.3 NC_003521.1 + 127020 0.66 0.847681
Target:  5'- gCCCgacgacgccgccgcgGUGCCCGUCGcGCUGGCc---- -3'
miRNA:   3'- aGGG---------------UACGGGCAGCaCGGCCGucuua -5'
14579 5' -59.3 NC_003521.1 + 120529 0.66 0.828833
Target:  5'- gCCCGgggaaggGCCC-UCGgcgGCCGGCGGu-- -3'
miRNA:   3'- aGGGUa------CGGGcAGCa--CGGCCGUCuua -5'
14579 5' -59.3 NC_003521.1 + 154242 0.66 0.826408
Target:  5'- uUCCCcgGCUgCGgCGUGCCcugccuccaguucuGGCAGAAg -3'
miRNA:   3'- -AGGGuaCGG-GCaGCACGG--------------CCGUCUUa -5'
14579 5' -59.3 NC_003521.1 + 85336 0.67 0.820694
Target:  5'- gCCCGcgGCCCGcCGcagGCCGGCGu--- -3'
miRNA:   3'- aGGGUa-CGGGCaGCa--CGGCCGUcuua -5'
14579 5' -59.3 NC_003521.1 + 34996 0.67 0.820694
Target:  5'- cUCCGggGCCagcgagcgcuugCGUCGUGCCcGGCGGAc- -3'
miRNA:   3'- aGGGUa-CGG------------GCAGCACGG-CCGUCUua -5'
14579 5' -59.3 NC_003521.1 + 128749 0.67 0.803953
Target:  5'- gCCCGaGCCCGUgGUGUaggUGGUGGggUu -3'
miRNA:   3'- aGGGUaCGGGCAgCACG---GCCGUCuuA- -5'
14579 5' -59.3 NC_003521.1 + 38914 0.68 0.759732
Target:  5'- gUCCCc-GCCCuguGUCGUGgCGGCAGu-- -3'
miRNA:   3'- -AGGGuaCGGG---CAGCACgGCCGUCuua -5'
14579 5' -59.3 NC_003521.1 + 209072 0.69 0.684007
Target:  5'- cCCCGaugUGCCgGUCGaGgCGGCGGAGg -3'
miRNA:   3'- aGGGU---ACGGgCAGCaCgGCCGUCUUa -5'
14579 5' -59.3 NC_003521.1 + 80042 0.7 0.644943
Target:  5'- aCCCGcGCCCG-CGUgccGCCGGCGGc-- -3'
miRNA:   3'- aGGGUaCGGGCaGCA---CGGCCGUCuua -5'
14579 5' -59.3 NC_003521.1 + 132995 0.7 0.635135
Target:  5'- aUCCCAUGCUCuacaaCGUGCCGcGguGGAa -3'
miRNA:   3'- -AGGGUACGGGca---GCACGGC-CguCUUa -5'
14579 5' -59.3 NC_003521.1 + 80527 0.7 0.615519
Target:  5'- -gCCGUGCCCacCGccuUGCCGGCGGAGc -3'
miRNA:   3'- agGGUACGGGcaGC---ACGGCCGUCUUa -5'
14579 5' -59.3 NC_003521.1 + 85437 0.71 0.586199
Target:  5'- cCCCGccgGCCuCGUCGUccgcGCCGGCgAGAAa -3'
miRNA:   3'- aGGGUa--CGG-GCAGCA----CGGCCG-UCUUa -5'
14579 5' -59.3 NC_003521.1 + 205203 0.74 0.420729
Target:  5'- gUCCGgagGCCCGUCcaggGCCGGCAGGc- -3'
miRNA:   3'- aGGGUa--CGGGCAGca--CGGCCGUCUua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.