miRNA: 3'- agGGUACGGG--CAGCACGGCCGucuua -5'
miRNA: 3'- aGGGUACGGGCAGcaCGGCCGUCuuA- -5'
miRNA: 3'- -AGGGUACGGGCAGCACGGCCGUCUUA- -5'
Results 21 - 23 of 23 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 14579 | 5' | -59.3 | NC_003521.1 | + | 234359 | 0.74 | 0.395894 |
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Target: 5'- -gCCAUGCCCugGUCGUGCCGGUg---- -3' miRNA: 3'- agGGUACGGG--CAGCACGGCCGucuua -5' |
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| 14579 | 5' | -59.3 | NC_003521.1 | + | 123482 | 0.76 | 0.306483 |
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Target: 5'- cUCCGUGUCCGUC--GCCGGCGGggUg -3' miRNA: 3'- aGGGUACGGGCAGcaCGGCCGUCuuA- -5' |
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| 14579 | 5' | -59.3 | NC_003521.1 | + | 203160 | 1.06 | 0.003257 |
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Target: 5'- gUCCCAUGCCCGUCGUGCCGGCAGAAUg -3' miRNA: 3'- -AGGGUACGGGCAGCACGGCCGUCUUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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