miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14580 3' -55.5 NC_003521.1 + 50832 0.66 0.968844
Target:  5'- gUGGGagCgGUGACGGCGGcuuUUUGAGa- -3'
miRNA:   3'- aGCCCg-GgUACUGCCGUC---AAACUCag -5'
14580 3' -55.5 NC_003521.1 + 196992 0.66 0.968844
Target:  5'- aCGGGCCCGcggccGGCGGCGGc-UGAc-- -3'
miRNA:   3'- aGCCCGGGUa----CUGCCGUCaaACUcag -5'
14580 3' -55.5 NC_003521.1 + 74887 0.66 0.968844
Target:  5'- aCGGcGCugcugcgcgagaCgGUGGCGGCGGUg-GAGUCg -3'
miRNA:   3'- aGCC-CG------------GgUACUGCCGUCAaaCUCAG- -5'
14580 3' -55.5 NC_003521.1 + 144902 0.66 0.965802
Target:  5'- gCGGGCCCAcggcaUGcCGGUGGccgagGAGUUc -3'
miRNA:   3'- aGCCCGGGU-----ACuGCCGUCaaa--CUCAG- -5'
14580 3' -55.5 NC_003521.1 + 210905 0.66 0.965802
Target:  5'- gUCGccaGGCCCuUGACGGCcac--GGGUCg -3'
miRNA:   3'- -AGC---CCGGGuACUGCCGucaaaCUCAG- -5'
14580 3' -55.5 NC_003521.1 + 229084 0.66 0.965802
Target:  5'- gUCGGGCCCGucgaUGACGGCc----GAcUCg -3'
miRNA:   3'- -AGCCCGGGU----ACUGCCGucaaaCUcAG- -5'
14580 3' -55.5 NC_003521.1 + 128830 0.66 0.965802
Target:  5'- -gGGGCUCGUaGACGGCGa--UGGGUa -3'
miRNA:   3'- agCCCGGGUA-CUGCCGUcaaACUCAg -5'
14580 3' -55.5 NC_003521.1 + 124918 0.66 0.965487
Target:  5'- -gGGGCCCGUGuucagcacgguguACaGCAGUccgUGGGUg -3'
miRNA:   3'- agCCCGGGUAC-------------UGcCGUCAa--ACUCAg -5'
14580 3' -55.5 NC_003521.1 + 212426 0.66 0.962557
Target:  5'- gCaGGCCCAUGAUGGcCAGgc---GUCg -3'
miRNA:   3'- aGcCCGGGUACUGCC-GUCaaacuCAG- -5'
14580 3' -55.5 NC_003521.1 + 212549 0.66 0.962557
Target:  5'- aCaGGCCCAcGACGGcCAGgggGAGg- -3'
miRNA:   3'- aGcCCGGGUaCUGCC-GUCaaaCUCag -5'
14580 3' -55.5 NC_003521.1 + 199367 0.66 0.961543
Target:  5'- gUGGGCCaccaccgugguguaGACGGCGGcggGGGUCg -3'
miRNA:   3'- aGCCCGGgua-----------CUGCCGUCaaaCUCAG- -5'
14580 3' -55.5 NC_003521.1 + 51624 0.66 0.960511
Target:  5'- cCGGGCCCGUGACgacauuaaauaggaaGGgaCGGggUGGGg- -3'
miRNA:   3'- aGCCCGGGUACUG---------------CC--GUCaaACUCag -5'
14580 3' -55.5 NC_003521.1 + 151105 0.66 0.959104
Target:  5'- gUCGGGCCgCuggggGAUGGCGGg--GGGa- -3'
miRNA:   3'- -AGCCCGG-Gua---CUGCCGUCaaaCUCag -5'
14580 3' -55.5 NC_003521.1 + 89014 0.66 0.958388
Target:  5'- gCGGGCCCcaccggcgccACGGCGGU--GAGUUc -3'
miRNA:   3'- aGCCCGGGuac-------UGCCGUCAaaCUCAG- -5'
14580 3' -55.5 NC_003521.1 + 176162 0.67 0.951556
Target:  5'- cUCGGaGCCCgGUGGCaGGUGGUUgaUGAG-Cg -3'
miRNA:   3'- -AGCC-CGGG-UACUG-CCGUCAA--ACUCaG- -5'
14580 3' -55.5 NC_003521.1 + 112329 0.67 0.947453
Target:  5'- aCGGGaCCC--GACGGCGGggUGAu-- -3'
miRNA:   3'- aGCCC-GGGuaCUGCCGUCaaACUcag -5'
14580 3' -55.5 NC_003521.1 + 74233 0.67 0.943127
Target:  5'- gUC-GGCgCCGUGACGGUggacgacgGGUUccugGAGUCg -3'
miRNA:   3'- -AGcCCG-GGUACUGCCG--------UCAAa---CUCAG- -5'
14580 3' -55.5 NC_003521.1 + 237392 0.67 0.943127
Target:  5'- cUCGGcGUCggCAUGGCGGgGGUcUGAGUg -3'
miRNA:   3'- -AGCC-CGG--GUACUGCCgUCAaACUCAg -5'
14580 3' -55.5 NC_003521.1 + 128508 0.67 0.943127
Target:  5'- gUCGGGuCCCGUGAUGGCAucGUgccGAc-- -3'
miRNA:   3'- -AGCCC-GGGUACUGCCGU--CAaa-CUcag -5'
14580 3' -55.5 NC_003521.1 + 102853 0.67 0.938576
Target:  5'- -gGGcGCCCGUGGCGuaGGUcUGGGcCg -3'
miRNA:   3'- agCC-CGGGUACUGCcgUCAaACUCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.