miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14580 5' -57.7 NC_003521.1 + 212785 0.66 0.924643
Target:  5'- ---cGCCUCUguugggucccgcUCC-CCGCGGCgUGCUg -3'
miRNA:   3'- gcuuCGGAGA------------AGGuGGUGCCG-ACGGa -5'
14580 5' -57.7 NC_003521.1 + 1765 0.66 0.924643
Target:  5'- -cAGGCuCUCUUCCucggaaCACGGC-GCCg -3'
miRNA:   3'- gcUUCG-GAGAAGGug----GUGCCGaCGGa -5'
14580 5' -57.7 NC_003521.1 + 144088 0.66 0.924643
Target:  5'- aCGu-GCUgggCUUCUGCCucauGCGGCUGCUg -3'
miRNA:   3'- -GCuuCGGa--GAAGGUGG----UGCCGACGGa -5'
14580 5' -57.7 NC_003521.1 + 201992 0.66 0.924643
Target:  5'- -cAGGCuCUCUUCCucggaaCACGGC-GCCg -3'
miRNA:   3'- gcUUCG-GAGAAGGug----GUGCCGaCGGa -5'
14580 5' -57.7 NC_003521.1 + 72396 0.66 0.924643
Target:  5'- ---cGCCcg--CCGCCGCGGCccUGCCg -3'
miRNA:   3'- gcuuCGGagaaGGUGGUGCCG--ACGGa -5'
14580 5' -57.7 NC_003521.1 + 40421 0.66 0.924643
Target:  5'- uCGguGCUg--UCCACCACGGCcaggUGCUc -3'
miRNA:   3'- -GCuuCGGagaAGGUGGUGCCG----ACGGa -5'
14580 5' -57.7 NC_003521.1 + 173681 0.66 0.919299
Target:  5'- aCGGAGCCcCcgUCCugUGCGGCccgcUGCUg -3'
miRNA:   3'- -GCUUCGGaGa-AGGugGUGCCG----ACGGa -5'
14580 5' -57.7 NC_003521.1 + 74208 0.66 0.919299
Target:  5'- cCGAcGCCgUCUUCUGCCACGucCUGCg- -3'
miRNA:   3'- -GCUuCGG-AGAAGGUGGUGCc-GACGga -5'
14580 5' -57.7 NC_003521.1 + 43934 0.66 0.919299
Target:  5'- cCGA--CCUCUUCggcgacgauCACCgGCGGCUGCUg -3'
miRNA:   3'- -GCUucGGAGAAG---------GUGG-UGCCGACGGa -5'
14580 5' -57.7 NC_003521.1 + 116232 0.66 0.919299
Target:  5'- uCGucGuCCUCgUCgGCCAuCGGCUGuCCUa -3'
miRNA:   3'- -GCuuC-GGAGaAGgUGGU-GCCGAC-GGA- -5'
14580 5' -57.7 NC_003521.1 + 116658 0.66 0.919299
Target:  5'- --cGGCCUCUcgcucuccagCCGCCGCuGUUGCCc -3'
miRNA:   3'- gcuUCGGAGAa---------GGUGGUGcCGACGGa -5'
14580 5' -57.7 NC_003521.1 + 49822 0.66 0.919299
Target:  5'- uGAGGCUgcccacgUCCACCuGCGccuGCUGCCg -3'
miRNA:   3'- gCUUCGGaga----AGGUGG-UGC---CGACGGa -5'
14580 5' -57.7 NC_003521.1 + 137075 0.66 0.918752
Target:  5'- --uGGUCUaCUUCCACCACGcggcgguGCUGCg- -3'
miRNA:   3'- gcuUCGGA-GAAGGUGGUGC-------CGACGga -5'
14580 5' -57.7 NC_003521.1 + 13862 0.66 0.913733
Target:  5'- gGggGUCUCUgcgggcggcgCCGCCAUGGauuucGCCg -3'
miRNA:   3'- gCuuCGGAGAa---------GGUGGUGCCga---CGGa -5'
14580 5' -57.7 NC_003521.1 + 208900 0.66 0.913733
Target:  5'- aGGAGCgCgaggUCAUCGCGcGCUGCCUg -3'
miRNA:   3'- gCUUCG-GagaaGGUGGUGC-CGACGGA- -5'
14580 5' -57.7 NC_003521.1 + 109742 0.66 0.913733
Target:  5'- cCGGAGCCcgCgcgaGCCGCGGUcGCCg -3'
miRNA:   3'- -GCUUCGGa-GaaggUGGUGCCGaCGGa -5'
14580 5' -57.7 NC_003521.1 + 149352 0.66 0.907946
Target:  5'- gCGAGGUCUgCUUCCugCGCacCUGUCUg -3'
miRNA:   3'- -GCUUCGGA-GAAGGugGUGccGACGGA- -5'
14580 5' -57.7 NC_003521.1 + 105642 0.66 0.907946
Target:  5'- gGAGGCCUUcaacaCCAuCCugGGCUuCCUg -3'
miRNA:   3'- gCUUCGGAGaa---GGU-GGugCCGAcGGA- -5'
14580 5' -57.7 NC_003521.1 + 100700 0.66 0.907946
Target:  5'- gCGGAGgCg---CCGCCGCGGCcGCUg -3'
miRNA:   3'- -GCUUCgGagaaGGUGGUGCCGaCGGa -5'
14580 5' -57.7 NC_003521.1 + 18446 0.66 0.907946
Target:  5'- gCGcGGCCUgugccgCUUCgACCGCGgGCUGCg- -3'
miRNA:   3'- -GCuUCGGA------GAAGgUGGUGC-CGACGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.