miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14580 5' -57.7 NC_003521.1 + 1290 0.66 0.907946
Target:  5'- gCGAcGCCgacgaauggUUCCGCUACGGC-GCCg -3'
miRNA:   3'- -GCUuCGGag-------AAGGUGGUGCCGaCGGa -5'
14580 5' -57.7 NC_003521.1 + 1765 0.66 0.924643
Target:  5'- -cAGGCuCUCUUCCucggaaCACGGC-GCCg -3'
miRNA:   3'- gcUUCG-GAGAAGGug----GUGCCGaCGGa -5'
14580 5' -57.7 NC_003521.1 + 7402 0.69 0.788216
Target:  5'- uCGAGGCCgUCggagCCACCGgGGCcaggaGCCg -3'
miRNA:   3'- -GCUUCGG-AGaa--GGUGGUgCCGa----CGGa -5'
14580 5' -57.7 NC_003521.1 + 8842 0.68 0.833777
Target:  5'- aGGAGCUUCUgCCaauucacaccgcgguGCUAUGGCUGUCg -3'
miRNA:   3'- gCUUCGGAGAaGG---------------UGGUGCCGACGGa -5'
14580 5' -57.7 NC_003521.1 + 11721 0.71 0.675206
Target:  5'- --cGGCCUCUucgagcaguUCUACCACGGUuugGCCa -3'
miRNA:   3'- gcuUCGGAGA---------AGGUGGUGCCGa--CGGa -5'
14580 5' -57.7 NC_003521.1 + 13287 0.66 0.895082
Target:  5'- uGAcGGCgUCUucauagccagaUCCaacaugaGCCugGGCUGCCUg -3'
miRNA:   3'- gCU-UCGgAGA-----------AGG-------UGGugCCGACGGA- -5'
14580 5' -57.7 NC_003521.1 + 13862 0.66 0.913733
Target:  5'- gGggGUCUCUgcgggcggcgCCGCCAUGGauuucGCCg -3'
miRNA:   3'- gCuuCGGAGAa---------GGUGGUGCCga---CGGa -5'
14580 5' -57.7 NC_003521.1 + 16165 0.67 0.882629
Target:  5'- uGAAGCUgCUgaCCaACUuCGGCUGCCUg -3'
miRNA:   3'- gCUUCGGaGAa-GG-UGGuGCCGACGGA- -5'
14580 5' -57.7 NC_003521.1 + 18446 0.66 0.907946
Target:  5'- gCGcGGCCUgugccgCUUCgACCGCGgGCUGCg- -3'
miRNA:   3'- -GCuUCGGA------GAAGgUGGUGC-CGACGga -5'
14580 5' -57.7 NC_003521.1 + 19466 0.67 0.868714
Target:  5'- aCGAGGaccccuCCUCUaCCGCCgcaaaGCGGCaGCCUu -3'
miRNA:   3'- -GCUUC------GGAGAaGGUGG-----UGCCGaCGGA- -5'
14580 5' -57.7 NC_003521.1 + 22196 0.67 0.861458
Target:  5'- cCGuGGCCgCUUaCCGCCGCGcGCUGgCg -3'
miRNA:   3'- -GCuUCGGaGAA-GGUGGUGC-CGACgGa -5'
14580 5' -57.7 NC_003521.1 + 22262 0.66 0.895716
Target:  5'- gGAuGCUggUCggggUCUACCACGGCcucGCCUg -3'
miRNA:   3'- gCUuCGG--AGa---AGGUGGUGCCGa--CGGA- -5'
14580 5' -57.7 NC_003521.1 + 26502 0.67 0.875773
Target:  5'- gCGAuGCgCUCUUcaCCACCAC-GCUGCUc -3'
miRNA:   3'- -GCUuCG-GAGAA--GGUGGUGcCGACGGa -5'
14580 5' -57.7 NC_003521.1 + 31055 0.66 0.895082
Target:  5'- cCGGAGCUcgC-UCCACUGCcagccgguacuccGGCUGCCg -3'
miRNA:   3'- -GCUUCGGa-GaAGGUGGUG-------------CCGACGGa -5'
14580 5' -57.7 NC_003521.1 + 33776 0.67 0.868714
Target:  5'- aGAGGCUgCUga-ACUugGGCUGCCc -3'
miRNA:   3'- gCUUCGGaGAaggUGGugCCGACGGa -5'
14580 5' -57.7 NC_003521.1 + 40421 0.66 0.924643
Target:  5'- uCGguGCUg--UCCACCACGGCcaggUGCUc -3'
miRNA:   3'- -GCuuCGGagaAGGUGGUGCCG----ACGGa -5'
14580 5' -57.7 NC_003521.1 + 43934 0.66 0.919299
Target:  5'- cCGA--CCUCUUCggcgacgauCACCgGCGGCUGCUg -3'
miRNA:   3'- -GCUucGGAGAAG---------GUGG-UGCCGACGGa -5'
14580 5' -57.7 NC_003521.1 + 45483 0.68 0.838553
Target:  5'- --cGGCCca--CCACCACGGCaGCCUu -3'
miRNA:   3'- gcuUCGGagaaGGUGGUGCCGaCGGA- -5'
14580 5' -57.7 NC_003521.1 + 45574 0.67 0.868714
Target:  5'- uGGAGCC-CUUCuCGCCcuacuCGGUgGCCUa -3'
miRNA:   3'- gCUUCGGaGAAG-GUGGu----GCCGaCGGA- -5'
14580 5' -57.7 NC_003521.1 + 48002 0.66 0.895716
Target:  5'- gCGccGCCgggCUUCUGCgGCuGCUGCCa -3'
miRNA:   3'- -GCuuCGGa--GAAGGUGgUGcCGACGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.