miRNA display CGI


Results 1 - 20 of 337 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14581 3' -53.6 NC_003521.1 + 144492 0.66 0.994659
Target:  5'- uGCG-AGGAgGACcUGGACGcCGAcugucgGCa -3'
miRNA:   3'- cCGCaUCCUgCUGuACCUGCuGCU------CG- -5'
14581 3' -53.6 NC_003521.1 + 181754 0.66 0.994659
Target:  5'- cGCGauccGGcCGACGaGGACaACGAGCu -3'
miRNA:   3'- cCGCau--CCuGCUGUaCCUGcUGCUCG- -5'
14581 3' -53.6 NC_003521.1 + 75112 0.66 0.994659
Target:  5'- cGCG-AGGugGcccGCAcGGugGACG-GCu -3'
miRNA:   3'- cCGCaUCCugC---UGUaCCugCUGCuCG- -5'
14581 3' -53.6 NC_003521.1 + 218089 0.66 0.994659
Target:  5'- aGGCGgcGG-CG-CcgGuGACGAUGAGg -3'
miRNA:   3'- -CCGCauCCuGCuGuaC-CUGCUGCUCg -5'
14581 3' -53.6 NC_003521.1 + 36978 0.66 0.994659
Target:  5'- gGGUGcucGGcGGCGACAUccGCGACGAGg -3'
miRNA:   3'- -CCGCa--UC-CUGCUGUAccUGCUGCUCg -5'
14581 3' -53.6 NC_003521.1 + 70112 0.66 0.994659
Target:  5'- cGGCGUgccgccgaAGGGCcGCuaucagGGccucgagcuGCGGCGAGCg -3'
miRNA:   3'- -CCGCA--------UCCUGcUGua----CC---------UGCUGCUCG- -5'
14581 3' -53.6 NC_003521.1 + 173257 0.66 0.994659
Target:  5'- gGGCGUGGGA-GGCAcGGGCGGu---- -3'
miRNA:   3'- -CCGCAUCCUgCUGUaCCUGCUgcucg -5'
14581 3' -53.6 NC_003521.1 + 209089 0.66 0.994659
Target:  5'- aGGCGgcGGA-GGCgGUGGccGCGGCGucccAGCa -3'
miRNA:   3'- -CCGCauCCUgCUG-UACC--UGCUGC----UCG- -5'
14581 3' -53.6 NC_003521.1 + 168756 0.66 0.994659
Target:  5'- uGCGggucGGACGcgAUGGA-GAUGAGCa -3'
miRNA:   3'- cCGCau--CCUGCugUACCUgCUGCUCG- -5'
14581 3' -53.6 NC_003521.1 + 236166 0.66 0.994584
Target:  5'- cGGCGggaccuagcGGACGAUggGUGGGguggcaggaaagcCGACgGAGCg -3'
miRNA:   3'- -CCGCau-------CCUGCUG--UACCU-------------GCUG-CUCG- -5'
14581 3' -53.6 NC_003521.1 + 234819 0.66 0.994351
Target:  5'- aGCGaugacgaagacGACGACggGGACGGCGAuaGCg -3'
miRNA:   3'- cCGCauc--------CUGCUGuaCCUGCUGCU--CG- -5'
14581 3' -53.6 NC_003521.1 + 27663 0.66 0.993862
Target:  5'- -aCGUGGGACaGACAc--ACGAgCGAGCg -3'
miRNA:   3'- ccGCAUCCUG-CUGUaccUGCU-GCUCG- -5'
14581 3' -53.6 NC_003521.1 + 207928 0.66 0.993862
Target:  5'- gGGCGgcGGgcacgGCGGCAgcaccGGCGgcGCGGGCg -3'
miRNA:   3'- -CCGCauCC-----UGCUGUac---CUGC--UGCUCG- -5'
14581 3' -53.6 NC_003521.1 + 117698 0.66 0.993862
Target:  5'- -cCGUAGacGCGACAugaUGGACGAUGcGCc -3'
miRNA:   3'- ccGCAUCc-UGCUGU---ACCUGCUGCuCG- -5'
14581 3' -53.6 NC_003521.1 + 151527 0.66 0.993862
Target:  5'- cGGCcagAGG-CGGCGcGGACG-CGGGUu -3'
miRNA:   3'- -CCGca-UCCuGCUGUaCCUGCuGCUCG- -5'
14581 3' -53.6 NC_003521.1 + 23634 0.66 0.993862
Target:  5'- uGGCcugccuGGGCGGCAUGGAcCGuCGucguuGGCa -3'
miRNA:   3'- -CCGcau---CCUGCUGUACCU-GCuGC-----UCG- -5'
14581 3' -53.6 NC_003521.1 + 110605 0.66 0.993862
Target:  5'- gGGCG-AGGGCGGCugcaucUGuACcGCGGGCa -3'
miRNA:   3'- -CCGCaUCCUGCUGu-----ACcUGcUGCUCG- -5'
14581 3' -53.6 NC_003521.1 + 86697 0.66 0.993862
Target:  5'- uGGCGggccGCGGCGgcGACGACGAGg -3'
miRNA:   3'- -CCGCauccUGCUGUacCUGCUGCUCg -5'
14581 3' -53.6 NC_003521.1 + 140062 0.66 0.993862
Target:  5'- cGCGcuacgaacAGGACGACGgcgaagccccGGACGACGAc- -3'
miRNA:   3'- cCGCa-------UCCUGCUGUa---------CCUGCUGCUcg -5'
14581 3' -53.6 NC_003521.1 + 105148 0.66 0.993862
Target:  5'- aGGUcccccAGGACGAgGUGG-UGACGAcGCc -3'
miRNA:   3'- -CCGca---UCCUGCUgUACCuGCUGCU-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.