miRNA display CGI


Results 1 - 20 of 337 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14581 3' -53.6 NC_003521.1 + 340 0.72 0.862352
Target:  5'- aGCGgguaaggAGGgcaaACGAUGUGGGCGGCGuGCu -3'
miRNA:   3'- cCGCa------UCC----UGCUGUACCUGCUGCuCG- -5'
14581 3' -53.6 NC_003521.1 + 1842 0.66 0.989671
Target:  5'- -aUGgcGGACGACAgaccgGGACGGgGcccGGCg -3'
miRNA:   3'- ccGCauCCUGCUGUa----CCUGCUgC---UCG- -5'
14581 3' -53.6 NC_003521.1 + 4251 0.73 0.823257
Target:  5'- cGGgGaggAGGACGAgAaGGACGGCgGAGCc -3'
miRNA:   3'- -CCgCa--UCCUGCUgUaCCUGCUG-CUCG- -5'
14581 3' -53.6 NC_003521.1 + 5839 0.67 0.981616
Target:  5'- cGGCGaccgGGGcccuuuuauGCGAUccGGGCG-CGGGCa -3'
miRNA:   3'- -CCGCa---UCC---------UGCUGuaCCUGCuGCUCG- -5'
14581 3' -53.6 NC_003521.1 + 6486 0.66 0.990884
Target:  5'- uGGCGUGGGAuCGugAgagUGuGACGGuguuuUGAGUu -3'
miRNA:   3'- -CCGCAUCCU-GCugU---AC-CUGCU-----GCUCG- -5'
14581 3' -53.6 NC_003521.1 + 6524 0.68 0.978904
Target:  5'- cGGUGacgAGGGCGgucuGCGUcccgccccagggcaGGGCGACGAGg -3'
miRNA:   3'- -CCGCa--UCCUGC----UGUA--------------CCUGCUGCUCg -5'
14581 3' -53.6 NC_003521.1 + 7728 0.69 0.963455
Target:  5'- gGGUGgggAGGGCGGCGcGaGCGGCGgaGGCg -3'
miRNA:   3'- -CCGCa--UCCUGCUGUaCcUGCUGC--UCG- -5'
14581 3' -53.6 NC_003521.1 + 7855 0.74 0.771061
Target:  5'- gGGUGgcGGACGGCcuccAUGGG-GAUGAGCu -3'
miRNA:   3'- -CCGCauCCUGCUG----UACCUgCUGCUCG- -5'
14581 3' -53.6 NC_003521.1 + 10500 0.71 0.902812
Target:  5'- cGGCG-GGGAUGGCGUGGccccccaGGCGGcGCg -3'
miRNA:   3'- -CCGCaUCCUGCUGUACCug-----CUGCU-CG- -5'
14581 3' -53.6 NC_003521.1 + 11699 0.66 0.99017
Target:  5'- uGGCGguuGGAUuuCGUGGAguuucaagacauuuuCGGCGAGUc -3'
miRNA:   3'- -CCGCau-CCUGcuGUACCU---------------GCUGCUCG- -5'
14581 3' -53.6 NC_003521.1 + 12344 0.69 0.963455
Target:  5'- aGGCuauGGugcugGGCGUGGugGGCGAGUc -3'
miRNA:   3'- -CCGcauCCug---CUGUACCugCUGCUCG- -5'
14581 3' -53.6 NC_003521.1 + 13036 0.68 0.974925
Target:  5'- aGGCGgagaacgGGGGCGACuccucCGACGAGg -3'
miRNA:   3'- -CCGCa------UCCUGCUGuaccuGCUGCUCg -5'
14581 3' -53.6 NC_003521.1 + 13465 0.7 0.935446
Target:  5'- cGGCgGUAGcGccguCGACGgucUGGGCGACGGGg -3'
miRNA:   3'- -CCG-CAUC-Cu---GCUGU---ACCUGCUGCUCg -5'
14581 3' -53.6 NC_003521.1 + 15513 0.67 0.981417
Target:  5'- cGGCGcucggguUGGcGGCGGCAUGuGGCGaACGcGCu -3'
miRNA:   3'- -CCGC-------AUC-CUGCUGUAC-CUGC-UGCuCG- -5'
14581 3' -53.6 NC_003521.1 + 16585 0.68 0.979555
Target:  5'- aGGCGaccggggAGGACGGaggAUGGugGugGuGUc -3'
miRNA:   3'- -CCGCa------UCCUGCUg--UACCugCugCuCG- -5'
14581 3' -53.6 NC_003521.1 + 16889 0.69 0.948749
Target:  5'- cGGCcaucuGGAgGAgGUGGAgGACGAGg -3'
miRNA:   3'- -CCGcau--CCUgCUgUACCUgCUGCUCg -5'
14581 3' -53.6 NC_003521.1 + 17050 0.75 0.761907
Target:  5'- cGGCGguaacGGcgcCGACAgcgaGGACGACGAGUg -3'
miRNA:   3'- -CCGCau---CCu--GCUGUa---CCUGCUGCUCG- -5'
14581 3' -53.6 NC_003521.1 + 17489 0.69 0.952744
Target:  5'- aGGCcUGGGgcaccuaucuGCGGCAgc-GCGACGAGCg -3'
miRNA:   3'- -CCGcAUCC----------UGCUGUaccUGCUGCUCG- -5'
14581 3' -53.6 NC_003521.1 + 17799 0.68 0.974925
Target:  5'- cGGCGUGcuGGccguGCGACcggcGGACGACGAc- -3'
miRNA:   3'- -CCGCAU--CC----UGCUGua--CCUGCUGCUcg -5'
14581 3' -53.6 NC_003521.1 + 18267 0.68 0.977327
Target:  5'- uGCGaguGGuACGugGUGGGCauGAUGGGCu -3'
miRNA:   3'- cCGCau-CC-UGCugUACCUG--CUGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.