miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14581 5' -63.1 NC_003521.1 + 195176 0.66 0.751415
Target:  5'- -uGUgCGCCGgaccCCGCGgagccGGCGGCgguggCCGu -3'
miRNA:   3'- cuCAgGCGGCa---GGCGC-----UCGCCGa----GGC- -5'
14581 5' -63.1 NC_003521.1 + 3657 0.66 0.751415
Target:  5'- ---gCCGCCGUCUGCcucGGCGGC-CgGg -3'
miRNA:   3'- cucaGGCGGCAGGCGc--UCGCCGaGgC- -5'
14581 5' -63.1 NC_003521.1 + 148423 0.66 0.751415
Target:  5'- uGGUgCgGgCGgCCGCGccGGCGGCUCCa -3'
miRNA:   3'- cUCA-GgCgGCaGGCGC--UCGCCGAGGc -5'
14581 5' -63.1 NC_003521.1 + 84552 0.66 0.751415
Target:  5'- cAG-CCGCuUGUUCaGCGAGCGGCcCUGg -3'
miRNA:   3'- cUCaGGCG-GCAGG-CGCUCGCCGaGGC- -5'
14581 5' -63.1 NC_003521.1 + 30852 0.66 0.751415
Target:  5'- -cGUCUggGCCGUCCGCG-GCaacuuCUCCGa -3'
miRNA:   3'- cuCAGG--CGGCAGGCGCuCGcc---GAGGC- -5'
14581 5' -63.1 NC_003521.1 + 4361 0.66 0.751415
Target:  5'- cGGUUCGCCGcuugCgGcCGAGCaGGUUCCa -3'
miRNA:   3'- cUCAGGCGGCa---GgC-GCUCG-CCGAGGc -5'
14581 5' -63.1 NC_003521.1 + 110757 0.66 0.742517
Target:  5'- -cGUCCaGCCGUCgGU-AGUaGGCUCCa -3'
miRNA:   3'- cuCAGG-CGGCAGgCGcUCG-CCGAGGc -5'
14581 5' -63.1 NC_003521.1 + 240755 0.66 0.742517
Target:  5'- cGGcCCGCCGcacgccgCCGCGGaaacCGGUUCCGu -3'
miRNA:   3'- cUCaGGCGGCa------GGCGCUc---GCCGAGGC- -5'
14581 5' -63.1 NC_003521.1 + 40528 0.66 0.742517
Target:  5'- cGGcCCGCCGcacgccgCCGCGGaaacCGGUUCCGu -3'
miRNA:   3'- cUCaGGCGGCa------GGCGCUc---GCCGAGGC- -5'
14581 5' -63.1 NC_003521.1 + 206 0.66 0.742517
Target:  5'- cGGcCCGCCGcacgccgCCGCGGaaacCGGUUCCGu -3'
miRNA:   3'- cUCaGGCGGCa------GGCGCUc---GCCGAGGC- -5'
14581 5' -63.1 NC_003521.1 + 105044 0.66 0.733536
Target:  5'- cGGcCCGcCCGUgCGCGAGCaGCcCCa -3'
miRNA:   3'- cUCaGGC-GGCAgGCGCUCGcCGaGGc -5'
14581 5' -63.1 NC_003521.1 + 35639 0.66 0.733536
Target:  5'- aGGUcCCGCaCGcgCUGCGAGCGGCa--- -3'
miRNA:   3'- cUCA-GGCG-GCa-GGCGCUCGCCGaggc -5'
14581 5' -63.1 NC_003521.1 + 172300 0.66 0.733536
Target:  5'- ---gCCGCCGUCCgGUGucGGUGGCgccaggCCGg -3'
miRNA:   3'- cucaGGCGGCAGG-CGC--UCGCCGa-----GGC- -5'
14581 5' -63.1 NC_003521.1 + 140219 0.66 0.733536
Target:  5'- cGAGU-CGCCGUgCaGCaugauGGCGGCUCCc -3'
miRNA:   3'- -CUCAgGCGGCAgG-CGc----UCGCCGAGGc -5'
14581 5' -63.1 NC_003521.1 + 23987 0.66 0.733536
Target:  5'- -cGUCCGCCGcgggCUGCGAccuccuGCGcGCcaUCCGg -3'
miRNA:   3'- cuCAGGCGGCa---GGCGCU------CGC-CG--AGGC- -5'
14581 5' -63.1 NC_003521.1 + 180947 0.66 0.724481
Target:  5'- cGGUgCCGuaGUCCGCG-G-GGCUCCu -3'
miRNA:   3'- cUCA-GGCggCAGGCGCuCgCCGAGGc -5'
14581 5' -63.1 NC_003521.1 + 119897 0.66 0.724481
Target:  5'- gGAG-CCGCCG-CCGCGGGCaGC-Cg- -3'
miRNA:   3'- -CUCaGGCGGCaGGCGCUCGcCGaGgc -5'
14581 5' -63.1 NC_003521.1 + 102638 0.66 0.724481
Target:  5'- cGGUCaggGCCucGUCCGUGaAGCGGCUgUCGg -3'
miRNA:   3'- cUCAGg--CGG--CAGGCGC-UCGCCGA-GGC- -5'
14581 5' -63.1 NC_003521.1 + 97591 0.66 0.715359
Target:  5'- gGAGauggCCGCCGagaagacaCgGCGA-CGGCUCCGg -3'
miRNA:   3'- -CUCa---GGCGGCa-------GgCGCUcGCCGAGGC- -5'
14581 5' -63.1 NC_003521.1 + 44243 0.66 0.715359
Target:  5'- ---gCCGCCGUgCGCGGGagucCGGCgucacgCCGg -3'
miRNA:   3'- cucaGGCGGCAgGCGCUC----GCCGa-----GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.