miRNA display CGI


Results 21 - 40 of 74 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14581 5' -63.1 NC_003521.1 + 113094 0.66 0.715359
Target:  5'- cGG-CCGCCGUggUGCagGAGCGGCUCuCGg -3'
miRNA:   3'- cUCaGGCGGCAg-GCG--CUCGCCGAG-GC- -5'
14581 5' -63.1 NC_003521.1 + 97591 0.66 0.715359
Target:  5'- gGAGauggCCGCCGagaagacaCgGCGA-CGGCUCCGg -3'
miRNA:   3'- -CUCa---GGCGGCa-------GgCGCUcGCCGAGGC- -5'
14581 5' -63.1 NC_003521.1 + 44243 0.66 0.715359
Target:  5'- ---gCCGCCGUgCGCGGGagucCGGCgucacgCCGg -3'
miRNA:   3'- cucaGGCGGCAgGCGCUC----GCCGa-----GGC- -5'
14581 5' -63.1 NC_003521.1 + 71977 0.66 0.706177
Target:  5'- uGAGcCCGgCGUCCGUGAcGCGcaGCUCg- -3'
miRNA:   3'- -CUCaGGCgGCAGGCGCU-CGC--CGAGgc -5'
14581 5' -63.1 NC_003521.1 + 203615 0.66 0.706177
Target:  5'- cGAGgCCGCCuaaCCGCGGuccccCGGCUCCu -3'
miRNA:   3'- -CUCaGGCGGca-GGCGCUc----GCCGAGGc -5'
14581 5' -63.1 NC_003521.1 + 88659 0.66 0.706177
Target:  5'- aGAGggCCGCCagGUCgGUGGGCcGGCggcCCGg -3'
miRNA:   3'- -CUCa-GGCGG--CAGgCGCUCG-CCGa--GGC- -5'
14581 5' -63.1 NC_003521.1 + 56779 0.67 0.696942
Target:  5'- -cGUCCagcuGCUGUgCGCGAG-GGCUCgCGa -3'
miRNA:   3'- cuCAGG----CGGCAgGCGCUCgCCGAG-GC- -5'
14581 5' -63.1 NC_003521.1 + 59561 0.67 0.696942
Target:  5'- -cGUCCGgCG-CCGCGGG-GGUUUCGu -3'
miRNA:   3'- cuCAGGCgGCaGGCGCUCgCCGAGGC- -5'
14581 5' -63.1 NC_003521.1 + 214806 0.67 0.696942
Target:  5'- ---aCCGCCGUCgggcgccgggCGCGgcgacGGCGGUUCCa -3'
miRNA:   3'- cucaGGCGGCAG----------GCGC-----UCGCCGAGGc -5'
14581 5' -63.1 NC_003521.1 + 152715 0.67 0.696942
Target:  5'- cGAGgCCGCCGacuccaugaacUUCGcCGAGUGGC-CCGu -3'
miRNA:   3'- -CUCaGGCGGC-----------AGGC-GCUCGCCGaGGC- -5'
14581 5' -63.1 NC_003521.1 + 53212 0.67 0.696942
Target:  5'- uGAGcUCGCCGgggagUCCGCGGGCGaaGCgaccgCCGg -3'
miRNA:   3'- -CUCaGGCGGC-----AGGCGCUCGC--CGa----GGC- -5'
14581 5' -63.1 NC_003521.1 + 43827 0.67 0.687661
Target:  5'- cGGGUcagccgCCGCCGgCCGCGGGCccgucacaGGCgccCCGg -3'
miRNA:   3'- -CUCA------GGCGGCaGGCGCUCG--------CCGa--GGC- -5'
14581 5' -63.1 NC_003521.1 + 187500 0.67 0.687661
Target:  5'- uGGUCaCGaCGaUCCGaCGAGaCGGCUCCu -3'
miRNA:   3'- cUCAG-GCgGC-AGGC-GCUC-GCCGAGGc -5'
14581 5' -63.1 NC_003521.1 + 196393 0.67 0.678341
Target:  5'- cGAG-CCGCCGUCaCGaUGGGCgGGCagCGg -3'
miRNA:   3'- -CUCaGGCGGCAG-GC-GCUCG-CCGagGC- -5'
14581 5' -63.1 NC_003521.1 + 77579 0.67 0.678341
Target:  5'- cGAGcCCGacgcugauguUCGUCCGCGAGUcccaGGCcgCCGg -3'
miRNA:   3'- -CUCaGGC----------GGCAGGCGCUCG----CCGa-GGC- -5'
14581 5' -63.1 NC_003521.1 + 228961 0.67 0.668989
Target:  5'- gGAGUCCuccUCGUCCgaggaggugcGCGGGCGGCgcaggaCCGg -3'
miRNA:   3'- -CUCAGGc--GGCAGG----------CGCUCGCCGa-----GGC- -5'
14581 5' -63.1 NC_003521.1 + 235196 0.67 0.668989
Target:  5'- uGGGUCCGUUc-CCGCGAcgggauccucauGUGGCUCUGg -3'
miRNA:   3'- -CUCAGGCGGcaGGCGCU------------CGCCGAGGC- -5'
14581 5' -63.1 NC_003521.1 + 70936 0.67 0.668989
Target:  5'- aGGGUCCacaGCagCGagCG-GAGCGGCUCCGg -3'
miRNA:   3'- -CUCAGG---CG--GCagGCgCUCGCCGAGGC- -5'
14581 5' -63.1 NC_003521.1 + 47626 0.67 0.659611
Target:  5'- -cGUCCaGgCGgCCGUGAcgGCGGCUCUGg -3'
miRNA:   3'- cuCAGG-CgGCaGGCGCU--CGCCGAGGC- -5'
14581 5' -63.1 NC_003521.1 + 148935 0.67 0.659611
Target:  5'- gGGGUCCGuCCGUCCGUG-GUcGCaCCGc -3'
miRNA:   3'- -CUCAGGC-GGCAGGCGCuCGcCGaGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.